BAC Information

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BAC

Clone NameMSMg01-393J05
Chromosome6 (Build37)
Map Location 47,547,276 - 47,547,704
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2
Downstream geneRn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393J05.T7 (MSMg01no393_j05.b1)MSMg01-393J05.TJ (MSMg01no393_j05.g1)
ACCAG494839AG494840
length784901
length of high quality
(start - end)
429 (60 - 488)88 (65 - 152)
definitionCHROMAT_FILE: MSMg01no393_j05.b1 PHD_FILE: MSMg01no393_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:33 2005CHROMAT_FILE: MSMg01no393_j05.g1 PHD_FILE: MSMg01no393_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCTTATTT
AATTTACCGAGCAGAACTAAGTGCTTCTACATTAAGTATGTACTTTTTTA
AATATAAAGTCTAGGTTGGAATAGTAAAGCTGAATGAGTACCAGTGAATC
AGCATTGCCTTAATTCTGTGATGACATTAACCAACTACAAAAGATAGTTA
GGGTATAGTGATGGGCAGAAAAAAATGGAATAACCTGACTTTGCAAATAA
GTTGATTATGTAGAGAGGATTTGATATTTTGCAACAGTGTTTATGAAGGC
CAGGAAAATGAGAGAAAAAAATATTTAGGCTTTGCTGGAAAGAAAAAACA
TCTGAAGATTTCTAAAGAAAATACTATACAGGCATGTCCTACAAACTTTT
GCAATCACTTCAGTGAGAGGATGGTGTTTTGCTTTTTTAATGTATGTACA
CAACACCAGCCATGTATGTGTGCGAATACTAGCTTCTAAGGGGACCTAGA
TGAATTAGAAAACCATGTAAAATAGATGATAGGATGCGAGCCACCAAGAT
TTTTTAAGACACTGGCGGAAGTCATCCTGGCCTTTTTAAGAAAATAATAT
TCACAATCCAATTTTAAGGGGCTAAAACCATAAACAGGAGAATTTGAATC
TCGGAAACCTACTTCTCCCACTGAATCCCTGTTATTGCTCCCATAGGGTT
GTTCGCGAACTGTTAATAAACGCCATTTTGTTTTTCTTTACTGCTTTTTA
CTACAATAAATAAATTTCTTTTTCTTCCTCCATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATCTCAACAGCATTATCTCAAGAGGATTCCTCCTCA
GGTCGATCCGCAAGACTCTGGCCCATCAGAGCAGGGGTGGGGTGGGGTGG
TCTCATTACCCAGTATGTTTTTCTTTTTAGGTTGTATGCCCTTATTTTCT
TGCCCTGTCCAATGCCTGTATTCCTCTCTCTTTTTTCATCTATTTTTCAC
ATTTTTCTCATTTTTCTTTCTTTCTTTCTCTTTATTCTGCTTTTTTCTTT
GTTCTTTTATTCTCCTTTTTTTTATTTACGCGCCTTATATATTCTTATTC
TATTTCCTTCTTTCTTTCTCGCTCTTTTTCCTTTCTCGTTCTCTTCCTTC
TTTTTTTCTTTCCTTTCCTCTTATCGTTTTTTTTCCTTTTTTCCTTCCCT
TTTTTTTTCGCGCGTCCTCTTTTTTCTTTTCCTTGCACCCTCTTTTTTCT
CTTCTTTCTCTTCCCCTTTTTCTCCTCGCTTCCCCCCTCCGAATCTTACA
ATTTCTCTTTTCTATTTTTCTCTCTTGTCCTTCTTTTTTCTTCTCTCGTT
TATGTCTTTTTCCGTTTTGTACCTATTTTTTTATCACTCTTTCTTTTTTC
ATCTTTTTCCTTCTTATCTTTCACTTTTTTTTATTTTTTTCCTCCTTTCC
TTTTCCTTTCTTTTTTTCTTTTTCTATTTCTATTATTTTCCCACCCTTAT
TCTTATCTTTTTTTACCCCTATTCCTCCTTTGTCCCTTTTCTTTCTTCTC
TTCTCCATTTATTTTTTTTTCTCTCTATCTTTCTAGCTTCAACTGTGATC
CTTCAATTACTTTTTTCATCACTCTCCTTTCTTCTTTTTACTCTTTTTGT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_j05.b1 MSMg01no393_j05.b1 CHROMAT_FILE:
MSMg01no393_j05.b1 PHD_FILE: MSMg01no393_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:33 2005
         (429 letters)



>mm_chr6_47547076_47547904
          Length = 829

 Score =  799 bits (413), Expect = 0.0
 Identities = 425/429 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagaactaagtgcttctacattaagtatgtacttttttaaatataaagtctaggttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagaactaagtgcttctacattaagtatgtacttttttaaatataaagtctaggttgg 260

                                                                       
Query: 61  aatagtaaagctgaatgagtaccagtgaatcagcattgccttaattctgtgatgacatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatagtaaagctgaatgagtaccagtgaatcagcattgccttaattctgtgatgacatta 320

                                                                       
Query: 121 accaactacaaaagatagttagggtatagtgatgggcagaaaaaaatggaataacctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaactacaaaagatagttagggtatagtgatgggcagaaaaaaatggaataacctgac 380

                                                                       
Query: 181 tttgcaaataagttgattatgtagagaggatttgatattttgcaacagtgtttatgaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgcaaataagttgattatgtagagaggatttgatattttgcaacagtgtttatgaagg 440

                                                                       
Query: 241 ccaggaaaatgagagaaaaaaatatttaggctttgctggaaagaaaaaacatctgaagat 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaggaaaatgagaaaaaaaaatatttaggctttgctggaaagaaaaaacatctgaagat 500

                                                                       
Query: 301 ttctaaagaaaatactatacaggcatgtcctacaaacttttgcaatcacttcagtgagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctaaagaaaatactatacaggcatgtcctacaaacttttgcaatcacttcagtgagag 560

                                                                       
Query: 361 gatggtgttttgcttttttaatgtatgtacacaacaccagccatgtatgtgtgcgaatac 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||
Sbjct: 561 gatggtgttttgcttttttaatgtatgtacagaacaccagccatgtatgtgtatgaatac 620

                    
Query: 421 tagcttcta 429
           |||||||||
Sbjct: 621 tagcttcta 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)