BAC Information

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BAC

Clone NameMSMg01-393L20
Chromosome6 (Build37)
Map Location 75,941,713 - 75,942,197
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
Downstream geneEG546907, LOC100042952, LOC668153, EG668155, LOC100042956, Ctnna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393L20.T7 (MSMg01no393_l20.b1)MSMg01-393L20.TJ (MSMg01no393_l20.g1)
ACCAG494962AG494963
length7801,159
length of high quality
(start - end)		553 (39 - 591)---
definitionCHROMAT_FILE: MSMg01no393_l20.b1 PHD_FILE: MSMg01no393_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:49 2005CHROMAT_FILE: MSMg01no393_l20.g1 PHD_FILE: MSMg01no393_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TCACTCGTGGGAGACCAACTTTCTCCTTGGGGACCTGTGCACAGCGGCCT
CAGCTCCCTGGTGCAGATGGCAACAGCATGACAAGTAGTTATTGTGTGGC
TCTCAGGTGCCTTGTCATAATCCCAAACTAAGATTAAAGTGATTTGACTG
ACTGGCTGAACCAATGTGCTCTTTCAAATTGTATCCTGCAGAATAAGACA
GATAAAAAACAAGAAAATTAGTAAAAACAAACAAACAAACAAAAAACCTA
AAACAAAACATTGTTTCTCATAAATGGTATTTGTTTGTTTGTTAGAGAAC
ATTAATTACATGGAGAAATTGAAGATTCTGTTTCACAGAAGGGGTCAGAT
CCGGTCTAATAGATATCATATGTAAGAAGCAACCTGACTACACAGAAGTG
GCATTCCTTGACATGATAAAAAGGATAGAAGATACACAAAGATTTTTCAA
ATTGACTAGATCTCAGCTTCTTCAACCTTAAACTTAGTTCCTCCTCATCA
CAGCTCTCTGAATCATAGGTAGATATTTTGCTCTTTGACAGTCACAGACC
CTAAGTGACATTCCAAGGGTGTGAATTAAGGGAAATTTTAATTGTAAAAA
ATCCCATTCCACATCTGTATTATTAATCAACTTTCTTGCCTTGCTAAAAA
AATTATGGTAGTTAATAAGAAGGGAAAGCACAGTCCCCCCCCCTAAAAAC
ATTATTAAAGGCTTGGGAACAAATTTATTA

GGGGGGGGTGGGGGAGGNCATTCCCCAGCGCTCTCCTCTCCCGCGGGCAG
CGCGTGGAGCGGTGTNCAGTCCAGTGTNNAATATATACCAAGCGCGGTGG
CGGAGCATCATGGTTACTAGCCATGTCTCGCATCGTGTGACTGCAGAACC
GCGTACTCTATGCCGCGATAGACACCGCTCACGCCGCACACTCTATGGAA
CCACTAGCAGTTAGTACCTGGTGGCGATTACTGCGCGAGTACTGTTGTGG
GTCGCGGCGTGCTATCATGTCCCAACTGCCGGCTGCCGTCACCTCGCCCT
ACCGCTGTAAGAGCTATGGACGACGAGGCGACAAGAGAGGGAGGCGCGAA
ACTTAACTGCGAGACGCTGATAATAAACGAGAGTCGGACGGGACGCGTCC
GCAGTGTATCCGGTGGCCAGGTGCGTCGGAGTGGGTGCCGTGTGAGCGTG
AGGCGTACGGGTGAGCAGCGTATATCTGAACTACACTATACGCACAAAAT
GACCTGATCCCTGGTGATGCGTGCCCTCGTCTCCACACCCATCCAGATCC
TTCCTATACTACCACTTGCACCGTAAGATCAGAGTCAGTCGCCAGTGTTG
CTATGCCGCGCCCGCTCCGCGCCCGATGCTATGTCGTGTCTCCCATGTCA
CCGCGAAGTCTGTTGTTAGCGTCTAGTGACGCATAATCTACATACCCTGA
TCAATCAGAGTCTTGCTCTGTCGCTCGACCCGTCTATTTGTGCTCAGCCG
ATGGTATTACTTCCTGTGTCGCACGCCGGCACATCACTCTATTCTCTCTG
TTGCGTCGAGTCGTGTTCAGCTTCCTGTCGATACTCATGTCTGGGTAGAA
GAGCGTGGCCTANGCATCACGCGCACAATATACACAAGGACACTCAGAAT
GATGCTGGCGCGGTCCGTGGCAGTTCGTCTCGTGTTGTGATGTCTACTGT
TGACGCTGCTAACGTGTTGGATATACCAACTGTAGAGTACGCTNTCTATC
ATATATATATCCGGACCGAAGTCGATGTGCTACGAACCGCGTCAGTGCGC
GCGACTGTTTTGTATATACTGCCGGATGTAGACAGCAGTCATGACGCTGG
AGCTCGTGTACGATCGCGAACGAGTGGGTGCACGGCCGCTCACATGTACG
GCTGCACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_l20.b1 MSMg01no393_l20.b1 CHROMAT_FILE:
MSMg01no393_l20.b1 PHD_FILE: MSMg01no393_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:49 2005
         (553 letters)



>mm_chr6_75941244_75942197
          Length = 954

 Score =  795 bits (411), Expect = 0.0
 Identities = 462/485 (95%), Gaps = 12/485 (2%)
 Strand = Plus / Minus

                                                                       
Query: 81  ggcaacagcatgacaagtagttattgtgtggctctcaggtgccttgtcataatcccaaac 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 ggcaacagcatgacaagtagttattgtgtggctctcaggtgccttgtcataatcccaaac 895

                                                                       
Query: 141 taagattaaagtgatttgactgactggctgaaccaatgtgctctttcaaattgtatcctg 200
           |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |
Sbjct: 894 taagattaaagtgatttgactgacttcctgaaccaatgtgctctttcaaattgtatcccg 835

                                                                       
Query: 201 cagaataagacagataaaaaacaagaaaattagtaaaaacaaacaaacaaac-aaaaaac 259
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 834 aagaataagacagataaaaaacaagaaaattagtaaaaacaaacaaacaaacaaaaaaac 775

                                                                       
Query: 260 ct----------aaaacaaaacattgtttctcataaatggtatttgtttg-tttgttaga 308
           ||          |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 774 ctaaaacaaaacaaaacaaaacattgtttctcataaatggtatttgtttgttttgtgaga 715

                                                                       
Query: 309 gaacattaattacatggagaaattgaagattctgtttcacagaaggggtcagatccggtc 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gaacattaattacatggagaaattgaagattctgtttcacagaaggggtcagatccggtc 655

                                                                       
Query: 369 taatagatatcatatgtaagaagcaacctgactacacagaagtggcattccttgacatga 428
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 654 taataaatattatatgtaagaagcaacctgactacacagaagtggcattccttgacatgt 595

                                                                       
Query: 429 taaaaaggatagaagatacacaaagatttttcaaattgactagatctcagcttcttcaac 488
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 594 taaaaaggatagaagatacacaaagatatttcaaattgactagatctcagcttctccaac 535

                                                                       
Query: 489 cttaaacttagttcctcctcatcacagctctctgaatcataggtagatattttgctcttt 548
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 534 cttaaacttagttcctcctcatcacagctctctgaatcataggtagatattttgttcttt 475

                
Query: 549 gacag 553
           |||||
Sbjct: 474 gacag 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space:   512592
Effective search space used:   512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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