BAC Information

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BAC

Clone NameMSMg01-393N14
Chromosome6 (Build37)
Map Location 67,170,841 - 67,171,340
singlet/doubletsinglet
Overlap geneEG667310
Upstream geneLOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik
Downstream geneLOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393N14.T7 (MSMg01no393_n14.b1)MSMg01-393N14.TJ (MSMg01no393_n14.g1)
ACCAG495045AG495046
length771762
length of high quality
(start - end)		526 (35 - 560)500 (62 - 561)
definitionCHROMAT_FILE: MSMg01no393_n14.b1 PHD_FILE: MSMg01no393_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:59 2005CHROMAT_FILE: MSMg01no393_n14.g1 PHD_FILE: MSMg01no393_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:59 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTCT
GTCTCTTCCATACTTGATCTTGCCACCCATTTCCTTCCCCAATCCCCCTC
TCCCACCCAGGTTCCTCCCTCCCTCTACCTCCTGTGATTATTTTGTTTCC
CCCCTTCTAAGTTGGGATTGAAGCATTCACACTTCAGCCTTGCTTCTTGT
TAAGCTTCATATGGTCTATGAATTGCATTCTGATCTTTGGGCTAATATGC
TCTTATCAGTAAGTACACTACTATGTATGTCCTTTTGGGTCTGGGTTACC
TCACTCAGGATGATATTTTCTAGTTCCATTCATTTGCCTGTAAAATTCAT
GAAGTTGTCATTTTTAATAACTAAGTAGTATTCCATTGTGTAAATGTACC
ACAATTTCTATCCATTGAGGGACATCTGGATTGTTTCCAGCTTCTGCCTA
TTATAAATAAAGCTGCTATGAACATAGTAGAGCACATTTCCTTGTTATAT
GTAGGAGCATCTTTGGGGTATATGCCCAGTAGTAGTATAGCTGGGTCTTC
AGCTATAGGAGTTCTGTGTAGAATTTTTGGGGTCACTTACGTATAATATC
ATATCACCTGTAAATAGTAAAACTTTGAGTTCCTTCCTTCAAATGGAATT
CTTTTTTACCCCCTTTGGTGGCAAATTGTCCCAGTAAAACTTTGAATACA
AAGCCTTAAAAAGGCCTCCCCGAAAAGGGGAAATAACCCCCAAACTATTA
AACCCCAAAACAATTTTGAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACAATAAGGATCTGCAAGCCAGGAAGTGTGGTGCATGCC
TTTAATCCCAGCACTGGGAGGTGGATCTCTGTCAGTTTGAGGCCAGCCTG
ATCTATAGAGTGAATTCTAGGATAGCCAGGGCTACACAAGGAAACCCTGT
GGGGAAGGGGAGGGGCTGATCTGATTTTCCACACAAGTAACTTATCAGCT
TGCTTAAAGACAATCTAAATGAATTTTCCCCATTCCATGTTTCTTTGGTT
TTTCCATTTTCCCTCTTTTCCCCCAAGGATAAGAACATGGCAGCAGTGGG
TTCGCTCAACTGACTACTACATGGTTATGCTAGTGTTTTATTAATTCAAA
AGCACTTTACAAGAAAATACAAATATGGCTTCTAATAGGAATGCTATACC
TGGACTTGATGCCAAGTTCACAGATTTGTGTGCAAGAGAAAACAGGCTTT
TAAGTTAAACAACAATTTGCAACCAAAACTTTAACCCAAGGATTCTCACA
AACATATTTCAAATGACAGTATGAAAATAAATCTTGCACGGNAACTCATA
AGTTCAACTCTACAATGTACAGCAGCTTCCTCACCAGGATGGAACCGCTT
TGAAAACCTTCTGGGTGCCGGTCCTACCCTTTTCCTGTTGGTTTGCGTCT
CTAGCACCCTCCTAAGAAGGTTTATCATTTCTCTCCAAGGACTTCACCGT
GTTTCTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_n14.g1 MSMg01no393_n14.g1 CHROMAT_FILE:
MSMg01no393_n14.g1 PHD_FILE: MSMg01no393_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:59 2005
         (500 letters)



>mm_chr6_67170641_67171540
          Length = 900

 Score =  951 bits (492), Expect = 0.0
 Identities = 498/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaataaggatctgcaagccaggaagtgtggtgcatgcctttaatcccagcactgggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaataaggatctgcaagccaggaagtgtggtgcatgcctttaatcccagcactgggagg 260

                                                                       
Query: 61  tggatctctgtcagtttgaggccagcctgatctatagagtgaattctaggatagccaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggatctctgtcagtttgaggccagcctgatctatagagtgaattctaggatagccaggg 320

                                                                       
Query: 121 ctacacaaggaaaccctgtggggaaggggaggggctgatctgattttccacacaagtaac 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ctacacaaggaaaccctgtggggaaggggaggggctgatctgattttctacacaagtaac 380

                                                                       
Query: 181 ttatcagcttgcttaaagacaatctaaatgaattttccccattccatgtttctttggttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatcagcttgcttaaagacaatctaaatgaattttccccattccatgtttctttggttt 440

                                                                       
Query: 241 ttccattttccctcttttcccccaaggataagaacatggcagcagtgggttcgctcaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccattttccctcttttcccccaaggataagaacatggcagcagtgggttcgctcaact 500

                                                                       
Query: 301 gactactacatggttatgctagtgttttattaattcaaaagcactttacaagaaaataca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactactacatggttatgctagtgttttattaattcaaaagcactttacaagaaaataca 560

                                                                       
Query: 361 aatatggcttctaataggaatgctatacctggacttgatgccaagttcacagatttgtgt 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 aatatggcttctaataggaatgctatacctggacttgataccaagttcacagatttgtgt 620

                                                                       
Query: 421 gcaagagaaaacaggcttttaagttaaacaacaatttgcaaccaaaactttaacccaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcaagagaaaacaggcttttaagttaaacaacaatttgcaaccaaaactttaacccaagg 680

                               
Query: 481 attctcacaaacatatttca 500
           ||||||||||||||||||||
Sbjct: 681 attctcacaaacatatttca 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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