Query= MSMg01no394_b15.b1 MSMg01no394_b15.b1 CHROMAT_FILE:
MSMg01no394_b15.b1 PHD_FILE: MSMg01no394_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:21 2005
(535 letters)
>mm_chr6_106762634_106763570
Length = 937
Score = 932 bits (482), Expect = 0.0
Identities = 523/538 (97%), Gaps = 4/538 (0%)
Strand = Plus / Plus
Query: 1 atagtgccaagcaagccctc---tttattattgagggattttagttggttttgaattttc 57
||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 201 atagtgcgaagcaaaccctcaactttattattgagggattttagttggttttgaatttcc 260
Query: 58 atggctcaaggcattgcctgacttcagaaaatggtcaataaatgcctgttgagtgaagtc 117
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct: 261 atggctcaaggcattgcctgactccagaaaatggtcaataagtgtctgttgagtgaagtc 320
Query: 118 tagggaatatttgcttaaaatatttcattacttttctcaccactttaatatagtatcttg 177
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 321 tagggaatatttgcttaaaatatctcattactgttctcaccactttaatatagtatcttg 380
Query: 178 tatggtgaagacattcaaacatatttgttgagtatttgaaaatgaattcagaaaccataa 237
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatagtgaagacattcaaacatatttgttgagtatttgaaaatgaattcagaaaccataa 440
Query: 238 ttacagtttaagctacatggtgtctcacagggaaagtgacttcacattctttttcactag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacagtttaagctacatggtgtctcacagggaaagtgacttcacattctttttcactag 500
Query: 298 gccatgaactgtcaccaattttctaggtaatatatgtcactctccaaatacattttctgc 357
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 gccatgaactgtcaccaattttctaggtaatgtatgtcactctccaaatacattttctgc 560
Query: 358 ttaaattatttttccctgcaaatgtttttagatatccaagataaataaagttggttttcc 417
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 561 ttaaattatttttccctgcaaatgtttttagatatccaagataa-taaagttgtttttcc 619
Query: 418 attttcaggatgctttcattgataatttcagaactcgaatgctaggataatgataatagt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attttcaggatgctttcattgataatttcagaactcgaatgctaggataatgataatagt 679
Query: 478 tgttaggccaactattaatatctgtgatcagctgatttattctggaaaatactttagg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgttaggccaactattaatatctgtgatcagctgatttattctggaaaatactttagg 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 937
Length adjustment: 10
Effective length of query: 525
Effective length of database: 927
Effective search space: 486675
Effective search space used: 486675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_b15.g1 MSMg01no394_b15.g1 CHROMAT_FILE:
MSMg01no394_b15.g1 PHD_FILE: MSMg01no394_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:21 2005
(516 letters)
>mm_chr6_106956501_106957417
Length = 917
Score = 953 bits (493), Expect = 0.0
Identities = 511/517 (98%), Gaps = 1/517 (0%)
Strand = Plus / Minus
Query: 1 taaagagatgcttaggtctctcagtctgtcagatgaaggaaacaatgaactctagagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 taaagagatgcttaggtctctcagtctgtcagatgaaggaaacaatgaactctagagata 658
Query: 61 aagggtattttgccaggaagctcttgatgggagaagaaaaatgcctaactggcagggaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aagggtattttgccaggaagctcttgatgggagaagaaaaatgcctaactggcagggaac 598
Query: 121 cttgtttccgctgaaagagatttcacacaattttaacaacttatcagatcaccttaccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cttgtttccgctgaaagagatttcacacaattttaacaacttatcagatcaccttaccct 538
Query: 181 atgagactaagatagggtaaagataaagatagatctatagtagggagaaccacacctaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgagactaagatagggtaaagataaagatagatctatagtagggagaaccacacctaga 478
Query: 241 ctgtgacagctaaaatggacagtgcaaattcttggccctctatttaaattttaatctcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ctgtgacagctaaaatggacagtgcaaattcttggccctctatttaaattttaatctcac 418
Query: 301 ttcagaactcacaaacagacttgggagattcagtggatctctttggccgtgttcctaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 417 ttcagaactcacaaacagacttgggagattcagtggatctctttggccgtgttactaacg 358
Query: 361 tggcccttttgaataagtctgttccctgctttccatttttaatgtggcttctttaattgg 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 357 tggcccttttgaataagtctgttccctgctttccatttttaatgtggcgtctttaattgg 298
Query: 421 aatattgatgatagatgtctaggcctagcttgggtaaagattggtatccttaaattccgt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 297 aatattgatgatagatgtctaggcctagcttgggtaaagattggtatccttaaattccat 238
Query: 481 gacagtcacagaggtctttcc-aaccactctctaact 516
|||||||||||||| |||||| |||||||||||||||
Sbjct: 237 gacagtcacagaggcctttcccaaccactctctaact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 917
Length adjustment: 10
Effective length of query: 506
Effective length of database: 907
Effective search space: 458942
Effective search space used: 458942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
