GGCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAACGTGAGATGTCAAATTTGGCATGCTTATTTCTGTTATG
GATATGGATATTTTGGAATAGCATATTTTAAGTGTTAAAAGCATTTAGAA
GAGAAAAAAATGGCTTATGGAATAATATAATTCCATAATTATATAGAAGC
CACAGTGGTTCTGTGACTTGGAATATGTCAATGTTTCTAAGTGTTATTCT
TATATTCATAAAATGAACACAGTAGGTACAATAACTATTATAAAATCCAT
ATAATGAGTTCCAGTATTTGGTGCTCTGAGAGTGTCTGTCTGATAACGAC
TGACTGTTGCTTTGAATGGAGATTATGCACTATGCCTCCACCTCTGAATG
TCTTTACATGTTTATTGTAATTACTGTCCTATTAATCACAGTTCTAAAAA
CAGATTTTGAGTTAAGTACAGGAAAAGCATAAAATAACTGATTTAAAGGA
GCTAGATATGAGCGAAGGGTTGAATGCAGGTCATTGACAGAGTTATGAAA
GCTGACATAAGACTAAATGTTTTTTCTAGTTCTAACCCTGTCATGGATAT
TTTGGCTTTGTTTTGCATGACGGATAAGGGTATAAAATATATTTGATAGT
GAAAGAATAAAATGCCTTTTGACTCTTCCCAGCTTTTGTTCCACTTGGCT
GCTCTAAACATGTAGAAGATCACTACCATTTACAGGGTTTTGGCCTATTC

NCCAATTATTNTNNNTAACCCTGNCNNCCCCCCTGNCTTTTCNAAATTTT
ACGTGAAACTATANNAAGGATTCCGCGGAAATTCACTTCACGAAAATTCT
CCTCTTCTGTGAANCAAGAAATTGTAAATGGGNCTTTCANCTTNCTCTAT
TCTTCAGTCCAAATTTTTGNTAAAAATTTTCTAAAAAACCAAAANTTACA
AAAAATTTGTAATTTTAAAATTAATATTTTGTTTCTTTGGGGGAAAAAAA
AATATATTTTATTATTGNNNATGTTCNTCTACCCCCCGCCCCCAATAAAA
NNNANGTTTTTTAGAAGNGATTTTTCNCCAGATTCTGTTTTTTAGGAGAT
TGTTGTAAATTATTTGGGAGGGGAGGTGAGGGGGGAAAATTTTTCTTTNT
TTCTTTAAAAAAAATTTNTTTAAATTTATTCTTTNNNTTTTTTTTTTTTT
TTTTTTAAAAAANTNTNNNNNTNNNNNNNNNTTTTATATTATATTATATA
TATAAAATTTNNNNTTNNNNNNNTATNTTTATTAATTGGATTATAAGTCT
ATCTGGGGGGGGGGGTGTGTGGCTGGGGGGGGGTCGGGGGGGTGGAGAAT
TACTTAATAATTNTATTTNATATTTTATTTTTGTGGTGTTGGTGTGTGTG
GTCTTNTTNNTTNNTTTNNNNNNANTATTATNAATTATAATTTTTTATAA
AATTTTTTTTCTTTNNNNNNNNTNNNTNNNNTTTTNTTTTTAATATTTTT
TTTTTCTTTTTTTNAATTTANTNNNNTTAATTTTTTNATATTTTTNNNAN
ATATTTTTANNTNNNTTTNNNNNTTTATATATATTTATATATATATTATT
AAANTATTATATATAATTTTTTATATATTTTACANNNTTNTTTNNTTTTN
NNTTTTTTTTTTTNNNTATATATTCANCTTTTATGATTATTATTTTATTA
TG

Query= MSMg01no394_c01.b1 MSMg01no394_c01.b1 CHROMAT_FILE:
MSMg01no394_c01.b1 PHD_FILE: MSMg01no394_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:23 2005
         (532 letters)



>mm_chr6_5021791_5022721
          Length = 931

 Score = 1006 bits (520), Expect = 0.0
 Identities = 526/528 (99%), Gaps = 1/528 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacgtgagatgtcaaatttggcatgcttatttctgttatggatatggatatttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gaattcaacgtgagatgtcaaatttggcatgcttatttctgttatggatatggatatttt 672

                                                                       
Query: 65  ggaatagcatattttaagtgttaaaagcatttagaagagaaaaaaatggcttatggaata 124
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 671 ggaatagcatattttaagtgttaaaagcatttagaagag-aaaaaatggcttatggaata 613

                                                                       
Query: 125 atataattccataattatatagaagccacagtggttctgtgacttggaatatgtcaatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 atataattccataattatatagaagccacagtggttctgtgacttggaatatgtcaatgt 553

                                                                       
Query: 185 ttctaagtgttattcttatattcataaaatgaacacagtaggtacaataactattataaa 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttctaagtgttattcttatattcgtaaaatgaacacagtaggtacaataactattataaa 493

                                                                       
Query: 245 atccatataatgagttccagtatttggtgctctgagagtgtctgtctgataacgactgac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atccatataatgagttccagtatttggtgctctgagagtgtctgtctgataacgactgac 433

                                                                       
Query: 305 tgttgctttgaatggagattatgcactatgcctccacctctgaatgtctttacatgttta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgttgctttgaatggagattatgcactatgcctccacctctgaatgtctttacatgttta 373

                                                                       
Query: 365 ttgtaattactgtcctattaatcacagttctaaaaacagattttgagttaagtacaggaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttgtaattactgtcctattaatcacagttctaaaaacagattttgagttaagtacaggaa 313

                                                                       
Query: 425 aagcataaaataactgatttaaaggagctagatatgagcgaagggttgaatgcaggtcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aagcataaaataactgatttaaaggagctagatatgagcgaagggttgaatgcaggtcat 253

                                                           
Query: 485 tgacagagttatgaaagctgacataagactaaatgttttttctagttc 532
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgacagagttatgaaagctgacataagactaaatgttttttctagttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 931
Length adjustment: 10
Effective length of query: 522
Effective length of database: 921
Effective search space:   480762
Effective search space used:   480762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)