Query= MSMg01no395_a04.b1 MSMg01no395_a04.b1 CHROMAT_FILE:
MSMg01no395_a04.b1 PHD_FILE: MSMg01no395_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:42 2005
(500 letters)
>mm_chr6_15911644_15912543
Length = 900
Score = 841 bits (435), Expect = 0.0
Identities = 480/499 (96%), Gaps = 10/499 (2%)
Strand = Plus / Plus
Query: 5 gaattcattgagtatttgattttaaattaatttttcattgttttgttttcaaaaatcatt 64
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 209 gaattcattgagcatttgattttaaattattttttcattgttttgttttcaaaaatcatt 268
Query: 65 ttactattatacacacacacacacacacacacaaatacacata-aaatacacatacacac 123
||||||||||||||||||||||||||||||||| | ||||| | |||||||||||
Sbjct: 269 ttactattatacacacacacacacacacacacacacacacacacaaatacacata----- 323
Query: 124 aaatacatacatacatac--atacatacatacatacatacatacatatatttgtagcagt 181
|||||| ||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 aaatac--acatacacacaaatacatacatacatacatacataaatatatttgtagcagt 381
Query: 182 gaacgtcagatacatgatttccatgtgggattaaagctcacaaattaaaagaccacacct 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 382 gaacgtcagatacatgatttccatgtgggattaaagctcacaaattaaaagaccacgcct 441
Query: 242 tagattaagacaacacaatatgattttactctcacaactgtatagtcaaatgttgtaacc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tagattaagacaacacaatatgattttactctcacaactgtatagtcaaatgttgtaacc 501
Query: 302 tagtaacttctctacaaaggattatcatagagaaggatgaaagaaaacttgggatttcca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tagtaacttctctacaaaggattatcatagagaaggatgaaagaaaacttgggatttcca 561
Query: 362 acaccaaatctataccagttgtacacattttatgtaaatactttagttcaagggataaaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acaccaaatctataccagttgtacacattttatgtaaatactttagttcaagggataaaa 621
Query: 422 aacatgtcctcgaggattagtgtgcttttccaagaattttcatagctggtctcttcctgt 481
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aacatgtcctcaaggattagtgtgcttttccaagaattttcatagctggtctcttcctgt 681
Query: 482 tttgcgcccttaaatccct 500
|||||||||||||||||||
Sbjct: 682 tttgcgcccttaaatccct 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no395_a04.g1 MSMg01no395_a04.g1 CHROMAT_FILE:
MSMg01no395_a04.g1 PHD_FILE: MSMg01no395_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:42 2005
(511 letters)
>mm_chr6_16097548_16098458
Length = 911
Score = 957 bits (495), Expect = 0.0
Identities = 507/511 (99%)
Strand = Plus / Minus
Query: 1 tgttgcctgatggtcatcatgctcactggataacttttcctaatctaagaaaaatttaaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 711 tgttgcctgatggtcatcatgctcactggataacttctcctaatctaagaaaaatttaaa 652
Query: 61 taacagaaatgagtgggaggctatgatctaacatggaaagaattgttttacgaaaagaag 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 651 taacagaaatgagtgggaggctatgatctaacatgaaaagaattgttttacgaaaagaag 592
Query: 121 atgccaaagctgtgtttgtttaagaagacaggtgctgagacgctttcacacagcctattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atgccaaagctgtgtttgtttaagaagacaggtgctgagacgctttcacacagcctattt 532
Query: 181 tctggggaattgttggttgtcttatgcactgagaaaactagacacatttgatatgcacta 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tccggggaattgttggttgtcttatgcactgagaaaactagacacatttgatatgcacta 472
Query: 241 ggaagaatggagcctttcaggatttcaaatgtgcagcctggattatcatgctagacagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ggaagaatggagcctttcaggatttcaaatgtgcagcctggattatcatgctagacagct 412
Query: 301 ctcagggatcctgggcataattagcaggtgatcacttccattttcagggcaccaaagtcc 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ctcatggatcctgggcataattagcaggtgatcacttccattttcagggcaccaaagtcc 352
Query: 361 taagaaatacacttttgcaaatacacatggagtcataattaaacccctgttgccacaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 taagaaatacacttttgcaaatacacatggagtcataattaaacccctgttgccacaata 292
Query: 421 ggctgtgcctatttcacatcacatacatgtgattaatacaaagtaatggaaactgtcaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ggctgtgcctatttcacatcacatacatgtgattaatacaaagtaatggaaactgtcaac 232
Query: 481 aaaagagtcacaacttacacttatggctttt 511
|||||||||||||||||||||||||||||||
Sbjct: 231 aaaagagtcacaacttacacttatggctttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
