Query= MSMg01no395_a23.b1 MSMg01no395_a23.b1 CHROMAT_FILE:
MSMg01no395_a23.b1 PHD_FILE: MSMg01no395_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:46 2005
(509 letters)
>mm_chr6_22546903_22547811
Length = 909
Score = 917 bits (474), Expect = 0.0
Identities = 500/512 (97%), Gaps = 8/512 (1%)
Strand = Plus / Plus
Query: 6 gaattcatctacaatac-aatataatctcatccttatctttggatttccagacctgaaat 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattcatctacaaaaccaatataatctcatccttatctttggatttccagacctgaaat 257
Query: 65 cagtgattttattttgagtgttttggaaatcacttctgactttactttgtctaaagttat 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 258 cagtgattttattttgagtgttttggaaatcacttctgactttcctttgtctaaagttat 317
Query: 125 tattatccattgttcataaatagattgactttgtgacatatccttgtggctgccatatat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tattatccattgttcataaatagattgactttgtgacatatccttgtggctgccatatat 377
Query: 185 taattcacataacacttttcttttgtaatacaataagattacataagattgttagtgagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taattcacataacacttttcttttgtaatacaataagattacataagattgttagtgagc 437
Query: 245 aatgggccttctctggatcctttctggatttgtaagtatgctgcattaattttttt-ctc 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 438 aatgggccttctctggatcctttctggatttgtaagtatgctgcattaattttttttctc 497
Query: 304 tttctcccaccatatctgattccttccatgtaactctcaaaataataataataatgataa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 498 tttctcccaccatatctgattccttccatgtaactctcaaaataataataataataataa 557
Query: 364 taataataataa------atatttaagaagctggagtttgcatgataatgtatcagtgtc 417
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 558 taataataataataataaatatttaagaagctgaagtttgcatgataatgtatcagtgtc 617
Query: 418 tttatgtatatatgaaattactctctggccttaagtagctttggggacagaaatcaaagc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tttatgtatatatgaaattactctctggccttaagtagctttggggacagaaatcaaagc 677
Query: 478 tcacctcttctctcacacagcttgatatatgg 509
||||||||||||||||||||||||||||||||
Sbjct: 678 tcacctcttctctcacacagcttgatatatgg 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no395_a23.g1 MSMg01no395_a23.g1 CHROMAT_FILE:
MSMg01no395_a23.g1 PHD_FILE: MSMg01no395_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:46 2005
(458 letters)
>mm_chr6_22723019_22723876
Length = 858
Score = 491 bits (254), Expect = e-143
Identities = 284/294 (96%)
Strand = Plus / Minus
Query: 165 tggcttttaaagtagaatataaaaattagaagttagaagaagatgagagttcagatgtta 224
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||
Sbjct: 658 tggcttttaaagtagaataaaaaaattagaagttagaagaagatgaaagttcagatggta 599
Query: 225 tacatttggagggtgagtgcgtaaaacttccaaataaacacagtaattttttggtcttag 284
|||||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||
Sbjct: 598 tacatttggagggtaagtgcataaagcttccaaataaacacagtacttttttggtcttag 539
Query: 285 ttttattttaagacattccatattataaatttttgttgtctggtgttaaaccaattttac 344
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 538 ttttattttaagacattccatattataaatttatgttgcctggtgttgaaccaattttac 479
Query: 345 taatgctaccaaaacattataaaagaatttgacaagcagttgtattagattaatcaaaca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 taatgctaccaaaacattataaaagaatttgacaagcagttgtattagattaatcaaaca 419
Query: 405 tggaccattgactaaatcccagtgattgagaatgaatcagcaacaaaagcttat 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tggaccattgactaaatcccagtgattgagaatgaatcagcaacaaaagcttat 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
