BAC Information

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BAC

Clone NameMSMg01-395B08
Chromosome6 (Build37)
Map Location 109,512,100 - 109,512,514
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110, LOC100043720
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395B08.T7 (MSMg01no395_b08.b1)MSMg01-395B08.TJ (MSMg01no395_b08.g1)
ACCAG495985AG495986
length784738
length of high quality
(start - end)
418 (50 - 467)442 (82 - 523)
definitionCHROMAT_FILE: MSMg01no395_b08.b1 PHD_FILE: MSMg01no395_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:48 2005CHROMAT_FILE: MSMg01no395_b08.g1 PHD_FILE: MSMg01no395_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTCTTTTTCTCCATTATTCCTGTCTTAGTATTTATT
ACTATTTGTGTGAATGTGTGTGCGCATATGTGCATAAGAACAGGCATGTA
TATGTGACTGTGTGTGTGTGTGGCACATGTTCACCAATGCACCTATCAGG
TTCATAGGACTACTCTGTAGAATTGTTTTTCTCTGTTTTTTTTTTTTTCT
GTGTTCTGGGATGGAGTTCAGGTTATCAGCCTTGGTAGAAAGCAGCTTTA
GGTACTGAGCCATCTCTGTGTCTCCAATGATGGCTCCACTTGATTGTTAT
AATTGTTGCTGCACATAGGAACTGCCAAAGACTGTGAGCTTACACAAGAC
CTTCACAAGATCAACCCAATAAAGTTTCCAGCATACCTGGGGGCAGGGGA
AGCTCATGAAATCTTGCCACTAGCTGAGAAGCTGTTGGCAACTGATGGCT
GCTGGGTCAGTTTTCTTTAGGGATATGGCTTTTGCAATTGCATCCATGTT
CCAGATGATGTTTATGCTGCAATATACTTAAAGGCCGCACTAACTGGGGT
TTGTTGAATATTACCCTTACCCTGTTGGCCCCAATGTCAAACCCCCCCCG
TTCAAAATCTACTTTTCTCCCCCCCCTCTTCTGTGTACCAACAATTCTTT
TTCTATTTCCCCTTTCCTCCTTTTTCCCCCCCTTTTTATCTTTTTTCCTC
CTTATTCACCTTTTTCCCTTTCTTTTCCTCCCCC
NNNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCTGTGAAATACTGAA
CTGCTGAGAATCACCTGAAAAAATTGTTCAGCATCCTTAATCATTAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGACGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTCTAGCGGTTCCTCGGGAAGTTGGACATAGTACTACTGG
AGGATCCTGCAATACTTCTCCTGGGCATATATCCAGAAGATGTTCCAACT
GGTAAGAAAGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGACAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATTTACACAATGAAGTACTACCAAGCTATTAAAAAC
ATGAATTTATGAAATTTCTAGGGTAATGGATGGACCTGCAGGGCATAATC
CTGAGGGAGTAACCCTTTCCTAAAGAGTTAATTGATAGGACTCCCCGACA
AGGGGCATTTACCCCCACCTTAAAATGCCCGCATATAACATAGTCGTGAA
CTCCTTGCTTTCTAGAAATGGGACCCCCGCCGGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_b08.b1 MSMg01no395_b08.b1 CHROMAT_FILE:
MSMg01no395_b08.b1 PHD_FILE: MSMg01no395_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:48 2005
         (418 letters)



>mm_chr6_109511896_109512712
          Length = 817

 Score =  683 bits (353), Expect = 0.0
 Identities = 399/421 (94%), Gaps = 14/421 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttt--gtttctttttctccattattcctgtcttagtatttattactatttgtgt 62
           |||||||||  ||   |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattctttgggt---tttttctccattattcctgtcttattatttattactatttgtgt 261

                                                                       
Query: 63  gaatgtgtgtgcgcatatgtgcataagaacaggcatgtatatgtgactgtgtgtgtgtgt 122
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taatgtgtgtgcgcatatgtgcataagaacaggcatgtatatgtgactgtgtgtgtgtgt 321

                                                                       
Query: 123 ggcacatgttcaccaatgcacctatcaggttcataggactactctgtagaattgtttttc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggcacatgttcaccaatgcacctatcaggttcataggactactctgtagaattgtttttc 381

                                                                       
Query: 183 tctgttttttttttttt------ctgtgttctgggatggagttcaggttatcagccttgg 236
           |||||||||||||||||      |||||||||||||||||||||||||||||||||||||
Sbjct: 382 tctgtttttttttttttttttttctgtgttctgggatggagttcaggttatcagccttgg 441

                                                                       
Query: 237 tagaaagcagctttaggtactgagccatctctgtgtctccaatgatggctccacttgatt 296
           | ||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||
Sbjct: 442 tggaaagcagctttaggtactgagccat---tgtggctccaatgatggctccacttgatt 498

                                                                       
Query: 297 gttataattgttgctgcacataggaactgccaaagactgtgagcttacacaagaccttca 356
           |||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||| ||
Sbjct: 499 gttataattgttgctgcacataggaactgccaaagactatgatcttacagaagacctgca 558

                                                                       
Query: 357 caagatcaacccaataaagtttccagcatacctgggggcaggggaagctcatgaaatctt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 caagatcaacccaataaagtttccagcatacctgggggcaggggaagctcatgaaatctt 618

            
Query: 417 g 417
           |
Sbjct: 619 g 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 817
Length adjustment: 9
Effective length of query: 409
Effective length of database: 808
Effective search space:   330472
Effective search space used:   330472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)