BAC Information

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BAC

Clone NameMSMg01-395G14
Chromosome6 (Build37)
Map Location 9,784,528 - 9,784,891
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040238, Nxph1
Downstream geneLOC330264, LOC100040285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395G14.T7 (MSMg01no395_g14.b1)MSMg01-395G14.TJ (MSMg01no395_g14.g1)
ACCAG496235AG496236
length769754
length of high quality
(start - end)
272 (46 - 317)338 (77 - 414)
definitionCHROMAT_FILE: MSMg01no395_g14.b1 PHD_FILE: MSMg01no395_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:15 2005CHROMAT_FILE: MSMg01no395_g14.g1 PHD_FILE: MSMg01no395_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCCTGATCTCCCCAGAACTTTTATCATGAATGGGTGTTGGATCTTG
TCAAATGCTTTTTCTGCATCCAACGAGATGATCATGTGGTTTTTGTCTTT
GAGTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAACC
ATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCT
TTAATGTGATCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGC
ATCGATATTCATAAGAGAATTTTTTCTGAAGTTCTCTATCTTTGTTGGAT
CTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTG
GGTAGAGTACTTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGG
AATTAGATCTTCTTTGAAGGTCCGATAGAACTCTGCACTAAACCCGTCTG
GTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATTACTGCTTCTATTTCT
TTAGGGGATATGTGATTGTTTAAATTGCCCATTGATTCTTGATTTATTTT
GCCACCTGGTATCTGTTCCCAATTTTGACCTTTTCCCCTCAGAATTTCCT
ATTTTTTTTAGTATAATCTCCCCCCCCAATCTCCCTCCGATCCCTGCTTT
TATTCTTTCTCCCCCTTTACACCCCCCCTCCCCTTTTCTCTCTGTCACAC
CCTATCTTTTATTCTTTTT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCACCTTTTACTACAGGGAATAA
AAGTTTCTTGAGGAAATAAATAAAGAAGAATAAAGAAATGAAAATAAAAA
TTATTTTGTGTTTAGAGATGACATGACTGTTATCTAAGTGCAGATTGGTT
TTTTTCAAGTACCTGGGAACTGAGATCCCTTCAATAGTCCTTCCGGGGCG
TGCATCTCAAACAACCTCGTGAACTCAAAAAACAGTTAGGGTTCTTCTTC
TGACTCAGACTGGGCATTTTGTTGAATCTGCTCAAAGAATCAAGACGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGATNTNNNNTNTTTTTTTTTTTNTNTTTNNTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTNTTTNTTTTTTTTTTTTTNNNTTTTTT
TTTTTTTTTTTTTTNTTTTTTTTTNNNTTTTTTTTTTTTTNTTTTTTTTT
TTTTTGNTGGTTTTTTTGTTTGTGGGGGTTTTTGTTTTTTTTTTTTGCTG
GTTTTTGNTTTTTTTTTGTTTGTTTTGGTTGTGTTTTTTTTTTTTTTTTT
TTTTTGNGTGGTGTTTGTTGTTNGGTTTGTTTTTTTTTGTGTTTTTTTTT
TTTTGTTTTTTTGTTTTTTGTTTTTTGTTTTGTTGTGTTTTTTTTTTTTT
GTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_g14.g1 MSMg01no395_g14.g1 CHROMAT_FILE:
MSMg01no395_g14.g1 PHD_FILE: MSMg01no395_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:15 2005
         (338 letters)



>mm_chr6_9784328_9785065
          Length = 738

 Score =  549 bits (284), Expect = e-161
 Identities = 332/364 (91%), Gaps = 26/364 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaccttttactacagggaataaaagtttcttgaggaaataaataaagaagaataaaga 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcacctcttactacagggaataaaagtttcttgaggaaataaataaagaagaataaaga 260

                                                                       
Query: 61  aatgaaaataaaaattattttgtgtttagagatgacatgactgttatctaagtgcagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgaaaataaaaattattttgtgtttagagatgacatgactgttatctaagtgcagatt 320

                                                                       
Query: 121 ggtttttttcaagtacctgggaactgagatcccttcaatagtccttccggggcgtgcatc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ggtttttttcaagtacctgggaactgagattccttcaatagtccttccggggcgtgcatc 380

                                                                       
Query: 181 tcaaacaacctcgtgaactcaaaaaacagttagggttcttcttctgactcagactgggca 240
           |||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct: 381 tcaaacaacctcatgaactcaaaaaacagttagggttcttcctctgactcagcctgagca 440

                                                                       
Query: 241 ttttgttgaatctgctcaaagaatcaaga-----------------------cgaga--- 274
           |||||||||||||||||||||||||||||                       |||||   
Sbjct: 441 ttttgttgaatctgctcaaagaatcaagaatcaagaatcaagaatcaagaatcgagacgg 500

                                                                       
Query: 275 gagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 560

               
Query: 335 gaga 338
           ||||
Sbjct: 561 gaga 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 134
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)