BAC Information

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BAC

Clone NameMSMg01-395I07
Chromosome6 (Build37)
Map Location 39,360,293 - 39,553,863
singlet/doubletdoublet
Overlap geneMkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2
Upstream geneTtc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19
Downstream geneBraf, Fth-ps2, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395I07.T7 (MSMg01no395_i07.b1)MSMg01-395I07.TJ (MSMg01no395_i07.g1)
ACCAG496317AG496318
length784778
length of high quality
(start - end)
245 (71 - 315)247 (74 - 320)
definitionCHROMAT_FILE: MSMg01no395_i07.b1 PHD_FILE: MSMg01no395_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:23 2005CHROMAT_FILE: MSMg01no395_i07.g1 PHD_FILE: MSMg01no395_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,360,293 - 39,360,537)(39,553,617 - 39,553,863)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXAATCAGGAACGGAGGCGCGGA
ATTCATTATTTCTAACACCTGGTGTGTTCACAACTATAGCAATGAACTTG
TCAGCCTAGGCTGGAAGACGGATTTGGATCAACAGTAGGGAGCACACACA
TCAAGGCAGCTGCCCTGAACGAAAGACTATCCTTATGAGAAGGTGCGGGA
TTAACTAGGGCCTCATACACACAAGCAGTCTATCACTAAGCTGTAGTCTC
AGCGCCCCCAATTTTAAACATTTATCTTGTTCATTGAAGGTTAATTCTGG
CCACTGCCCTTGTTTATAGTTCTAGGACTGTATTTTTCACTAACTTCAGT
CCCTATCCTCCCAGCACATCAAAGATAAAGAAACCACATAGACTACAAAG
TTGTCAGGCTACCACCCACATTCAATGTTGTTAAGGAAACACTTTTAATT
CCTTAAAAGCCACATATGAAAAAAGCAAAACTAGGCCAGCAACTTTAAGG
GATTATAGGCAGACGTGATTAGCAGTTTCTAGACACCAACAAACAGCGAC
AGCATTATGTGAGCATTTGTTGGACCTAATTAGCCCTACCCAGGAACCAG
GGCTCTTCTGGATCTGGCTCATCCACCAAACAGTTGCCAGAGGGGATCGT
TTTTTTTCTTTTTTCAATCCGCAGGGGAATCCCGGCGGGGGTCCCCATCC
CCTGGGTCCCCTTAAAGGGTGTTCTTGGGCCGCGCCCAATAATAAAGCCT
TTTTTTTTTCCTGCCGCGCAACTTTTGTTGCCTC
NNNTTCGATGAAGCTGGAGGCCTGGNGGNCGCCTGGTTCACAAATTTAGG
TGAACTATAGAAGTACAGACAAAATTCCTATGGCTCCTGTTTCACCACCC
GCACCTACGGCAACCCATATACATTCCTCTTGTCTGTAACTGCCAAAGGT
TGGGTTTATGTCACTTCAGTTCCACTCAAGCATTGAAAAGGTTCTCATGG
AGTCTGGGGTGTGCCCAGTGAAAAGATGGGGACTTTTTCATTATCCACAG
ATTTCTCTATACCTGCTTTGCAAAAATTATAATGGAGTAACTATTTTTAA
AGCTTATTTTTCAATTCATATTAATAAGACATTTATTTTCAATCAAATGG
ATGATGTCTCTTATCCCTTATCCCTCAATGTTTGCTTGAATTTTGTTTGT
TCCCTATACCTACTCCCCAACTCTTTAGTTCCTTCCTGCTCAGGTCCCTT
CATTTGTACTTTGGAGTTTTTCTCATGTAAATTTGTATAATGGAAAATAT
TGTTCAGTTTGGATAGAAAGCATGGATAAATAAATAACAAAAGATAGCTG
AAAATCTAATTGAAACTTATTTCTGTGTAAAGCTATTTAAAAACTCTGCC
ATATATTTTAAGAAAAAAGCCCAACCCCCCACAAAGGGCCATGGAAATCG
AAGGGGAAATTGTTTTTTATGCTAAAAAACAGAATGAACTGGCTGGAAAA
AATTTATCATTATTTTTTTTCTTTGGCTTCCTTACACCCCAATTTCCCCG
CTTTTTACCCTTTCTTTTTACGCCATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_i07.b1 MSMg01no395_i07.b1 CHROMAT_FILE:
MSMg01no395_i07.b1 PHD_FILE: MSMg01no395_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:23 2005
         (245 letters)



>mm_chr6_39360093_39360737
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgtgttcacaactatagcaatgaacttgtcagcctaggctggaagacggatttggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgtgttcacaactatagcaatgaacttgtcagcctaggctggaagacggatttggatc 260

                                                                       
Query: 61  aacagtagggagcacacacatcaaggcagctgccctgaacgaaagactatccttatgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagtagggagcacacacatcaaggcagctgccctgaacgaaagactatccttatgaga 320

                                                                       
Query: 121 aggtgcgggattaactagggcctcatacacacaagcagtctatcactaagctgtagtctc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 aggtgcgggattaactagggcctcatacacacaagcagtctatcactaagctgtagcctc 380

                                                                       
Query: 181 agcgcccccaattttaaacatttatcttgttcattgaaggttaattctggccactgccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcgcccccaattttaaacatttatcttgttcattgaaggttaattctggccactgccct 440

                
Query: 241 tgttt 245
           |||||
Sbjct: 441 tgttt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no395_i07.g1 MSMg01no395_i07.g1 CHROMAT_FILE:
MSMg01no395_i07.g1 PHD_FILE: MSMg01no395_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:23 2005
         (247 letters)



>mm_chr6_39553417_39554063
          Length = 647

 Score =  455 bits (235), Expect = e-132
 Identities = 244/247 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctatggctcctgtttcaccacccgcacctacggcaacccatatacattcctcttgt 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 447 attcctatggctcctgtttcaccacccgcacctatggcaacccatatacattcctcttgt 388

                                                                       
Query: 61  ctgtaactgccaaaggttgggtttatgtcacttcagttccactcaagcattgaaaaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctgtaactgccaaaggttgggtttatgtcacttcagttccactcaagcattgaaaaggtt 328

                                                                       
Query: 121 ctcatggagtctggggtgtgcccagtgaaaagatggggactttttcattatccacagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 327 ctcatggagtctggggtgtgcccagtgaaaagatggggactttttcattatccacagacc 268

                                                                       
Query: 181 tctctatacctgctttgcaaaaattataatggagtaactatttttaaagcttatttttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tctctatacctgctttgcaaaaattataatggagtaactatttttaaagcttatttttca 208

                  
Query: 241 attcata 247
           |||||||
Sbjct: 207 attcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)