BAC Information

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BAC

Clone NameMSMg01-395L06
Chromosome6 (Build37)
Map Location 110,601,459 - 110,601,829
singlet/doubletsinglet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395L06.T7 (MSMg01no395_l06.b1)MSMg01-395L06.TJ (MSMg01no395_l06.g1)
ACCAG496457AG496458
length777768
length of high quality
(start - end)
377 (49 - 425)382 (78 - 459)
definitionCHROMAT_FILE: MSMg01no395_l06.b1 PHD_FILE: MSMg01no395_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:37 2005CHROMAT_FILE: MSMg01no395_l06.g1 PHD_FILE: MSMg01no395_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTTTCCAGGCGTCAAATAATGACATCCTTCTTATGTC
CCTTATTTCAGGGTTAGGTCACATGGCTCAGGCCAAGTAAAGTAAATGAA
TAGTTTAGCAGTGGGCATCTGGGTCTACACATACCAGAATCCTCCTCACG
ACCTTTCTGTCAGAAAGAATGGGAATATCATTTTTCCTCCTTGGAAGTTC
AGTTCTGGGGAGTTGTGAGTTGGAGTGTCAACACACAGAGAGACTTGATA
ACAAATCAGACAGAAGAAAGTAGATTTGAGGAGAATACACAGACAGCCTG
AGCTTTGCTAACCTGGAGCCCTGAATTTCTATAAAAACAGGCTGGCAAGA
TGGCTCAGCTGGTAAAGCCCTTCTGCTAGTCTGGTGACCTGAGTTTGATC
CATAAATACATATAAATGTGGAAGGAAAGAACAATATCCATATAGTTACT
CATTGACTTTCATGCAGGCACTGCGTTACATATATCCCAATATTCCACTC
TATACCCTTTCACATTTTCCCACATTACTTCCTCCCTCAATTTTTTTCAC
TCACTCCCTCCCTTTTGCTCTTTTCCCCCCTCTTTCTTCCCCCCCCATAC
TCTTTTTCTTATATTTGGCCTCTTCTTTTTTTATCTTCCGTCTTTACTCT
TTGTATCTCTTTCTTACCTTTTCTCGCTTATTTTTTTTTTCTTAATATTT
ACCCATTTTCTTTTTTTTTCACCCCCG
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTAGAACCCTATGTAGTGAA
AGGAGAAAAACACATGCACACACACACACAAACAGACACACACCACACAC
ATACACACATACACACACACACATATTTTAAATTATTAAAAATACAGTAA
TTGTTCTTAAGTGCTTACATTTTGGGCTTGGTCAGTAAAATGCAAGCATG
TAGATATGAGCTGGTACCCAGGAACCACATATCAAAGTGTGGCTTAGTAA
ACACATTAGCAAGCTGTCTTCTGGTATAAAAGTGTGTCTTTAAGGCTCAC
TGCCTGGACAATCTAAAGTACTCAGTGAGTTCCATGGTTAGTTAGAAACC
CTTTCCCAATGATCACTGTGGATAGAATCCAAGAAGCATTACTGGAATCT
GAACTCTGACCTCCACAACCATGTGTAGATATATGTGGACTCCCTCACAC
AAACATACACAAGAAATGCTTGTATCTAGAATACTCTTAAATGGCTAAAC
TAAGAAAGAACTATATGGCTGTATTTTACAACGCATGAATCTAAAAGCAC
AGGTCCAGATGGAAAATCTTTTTTTATGATAAAAGACTTCTAATAAAAAA
AAACCCCTTGGTTAAAAAAACAAGAACTCTCCGGTCCCACAAAAATACCT
ACTTTTCCTTAACCCCTTTTGGTCCCCCCCTTTAATATTAACCTTTCTTG
TCGCTCAAATAAAAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_l06.b1 MSMg01no395_l06.b1 CHROMAT_FILE:
MSMg01no395_l06.b1 PHD_FILE: MSMg01no395_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:37 2005
         (377 letters)



>mm_chr6_110601253_110602029
          Length = 777

 Score =  648 bits (335), Expect = 0.0
 Identities = 362/375 (96%), Gaps = 8/375 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   attctttgtttttccaggc----gtcaaataatgacatccttcttatgtcccttatttca 62
           |||||||||||    ||||    ||||||||||||||||||||||| || ||||||||||
Sbjct: 207 attctttgttt----aggcaggtgtcaaataatgacatccttcttacgttccttatttca 262

                                                                       
Query: 63  gggttaggtcacatggctcaggccaagtaaagtaaatgaatagtttagcagtgggcatct 122
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 263 gggttaggtcacatggctcaggccaagtaaagtaaataaatagtttagcagtgggcatct 322

                                                                       
Query: 123 gggtctacacataccagaatcctcctcacgacctttctgtcagaaagaatgggaatatca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gggtctacacataccagaatcctcctcacgacctttctgtcagaaagaatgggaatatca 382

                                                                       
Query: 183 tttttcctccttggaagttcagttctggggagttgtgagttggagtgtcaacacacagag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttttcctccttggaagttcagttctggggagttgtgagttggagtgtcaacacacagag 442

                                                                       
Query: 243 agacttgataacaaatcagacagaagaaagtagatttgaggagaatacacagacagcctg 302
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 agacttgataacaaatcagacagaagaaagtagagttgaggagaatacacagacagcctg 502

                                                                       
Query: 303 agctttgctaacctggagccctgaatttctataaaaacaggctggcaagatggctcagct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agctttgctaacctggagccctgaatttctataaaaacaggctggcaagatggctcagct 562

                          
Query: 363 ggtaaagcccttctg 377
           ||||||| |||||||
Sbjct: 563 ggtaaagtccttctg 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)