BAC Information

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BAC

Clone NameMSMg01-396I15
Chromosome6 (Build37)
Map Location 106,376,076 - 106,376,334
singlet/doubletsinglet
Overlap geneCntn4
Upstream geneLOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396I15.T7 (MSMg01no396_i15.b1)MSMg01-396I15.TJ (MSMg01no396_i15.g1)
ACCAG497093AG497094
length1,175746
length of high quality
(start - end)
---259 (320 - 578)
definitionCHROMAT_FILE: MSMg01no396_i15.b1 PHD_FILE: MSMg01no396_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:41 2005CHROMAT_FILE: MSMg01no396_i15.g1 PHD_FILE: MSMg01no396_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCAACTAGAGAAAGATTCNAAAGTTAAATTTTAATAACAAAAATTTGTT
GTTGTTTCATCGTCTTAAAATATATCACACAAAACGAGGAAAATGACTTT
GTGAAACGCAGCAAACACGCGGTCTGGGATAAGAAANTAATAGACAACAA
AGAACGATTTTTAAACATTAATATATTTTTTTAAACTCAAATGAAAATGT
TATACATATAAACCGACCCCAACTTAATACCCCGCCTCGATTCCGCCGTT
GGAGCCGCCTATACGGCTTAAACCAATTTAACTATAAAATCCCCTTTATT
TATTTTTGCCCGCCCCTTTCTGCTACGCGCCCAGTACTTTTTTAACGAGT
GTATACATATTACGATAATCGCGAATACCCAATTAAACTAAACAATACAA
ATAATAAAAAAAATAATAATAATATGTGTACCGCTATTTTCACCGATCAG
TTCAACTTATTAATTAGTTAAAAAGCAACAAAAAACAGAGCGATACACGC
AAGCTATCTATATTCAAAGAAAAAATATGAGGTCAGACGAACAAGATAAT
TTTATATATCACCTTAATACTACAACTTTTTCCAACACCATACCACCTCT
TATTTCTTATTCTTTCAACACTCCCCTACTCGTTCCCTTATTTGATTTAG
TAACACGCCCCGCCACGCCCCTTAATAACTTATTCCACTTTTCCCGCTAA
TTTTCGTTATTAAATATACACTCGCGCTGCCTGTATCCCCTCGAATTATT
TTTATATACCCCACACCATATCGCCACTTAATTTTATCCGGCCCCGCAAC
CTACATATCACAATACAATACAACTATACATCCCCCATATACTCACACCA
ACATAATAACACACATAACGCGAATATCACAAATGATAGCGTTTCGAAAT
AACATAAAAATATTCATACCCTATATCCCCCCCCCCTCAAACTATTACTA
TTCAAAACAAAAAACTATAATAATAAATAAGAGAATAAAAAAGAATAATG
CTGCTATAATTACATAATTATATTATATATATGCTCGTGTGCACAACTCT
AATATATCACCAAAACACTGTGTAAATATTACATGCGTATATTNCCACGC
AGTCACCTTTCCTATCATTAATACCTCATCCCCGCCGCGACAAATAATAA
ACCAATGTAACATATCCCATCTTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATGTTCCTAAGTAGCTGGACATATGTGGCCTTAGAGT
TATTTTAGGCAAATCAAGGCTGTGAGAATAAGCAACTATAATAAGTTTCT
TGGGACAGTAGGCACTAATCTGCTGTGCACTGGTTGAAGAACACTGAAGG
ACAGGAAAAACAAGGATTCGTACAGAAGGAAATCTCTCAGATGAGGAGCA
GCTGTTATGTATGTTGAATTTAAGATGTTTCAGAAACTTTAACCATATAT
TTTTATCTCANNTTANTACAGTTTTGAAAATAAAACCATCATCAACTCTC
CATGCAAGCTCTGTGTTTATTCACTGAGTATTTTGATTTTGCTCAGGGTG
CTGTTTCACGCTCTCATTTTCATAAGGAGGAATCTGGATGCCAGGAGCTT
GCTATGCTAGAAACAGATAAATATGTTTATGCATTTGCACAATGTCAGAA
TTTTTACTGAGTAACAATAACTTACAATATCCAGTGGTCTCACCTACACA
ATCTGGCCAATGTGAATGAATGCAGGACCTTTTAGNCTGATCTTAATTAT
TAATATTTACTCTTATAACATAGATCTATTCTGGAAAGGTGGNACTTGAC
TGCTTGGGTCATTTGCAGGCCTGACCAAGAGACATATTCTCAGTCCTTTC
ATATGGGATCAAAAGTTGCCTGTTGAATTGTTTCCCCCTGCAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_i15.g1 MSMg01no396_i15.g1 CHROMAT_FILE:
MSMg01no396_i15.g1 PHD_FILE: MSMg01no396_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:41 2005
         (259 letters)



>mm_chr6_106375876_106376534
          Length = 659

 Score =  485 bits (251), Expect = e-142
 Identities = 257/259 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttttgaaaataaaaccatcatcaactctccatgcaagctctgtgtttattcactgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 agttttgaaaataaaaccatcatcaactctccatgcaagctctgtgtttattcactgagt 400

                                                                       
Query: 61  attttgattttgctcagggtgctgtttcacgctctcattttcataaggaggaatctggat 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 attttgattttgctaagggtgctgtttcacgctctcattttcataaggaggaatctggat 340

                                                                       
Query: 121 gccaggagcttgctatgctagaaacagataaatatgtttatgcatttgcacaatgtcaga 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 339 gccaggagcttgctatgctagaaacagataaatatgtttatgcttttgcacaatgtcaga 280

                                                                       
Query: 181 atttttactgagtaacaataacttacaatatccagtggtctcacctacacaatctggcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atttttactgagtaacaataacttacaatatccagtggtctcacctacacaatctggcca 220

                              
Query: 241 atgtgaatgaatgcaggac 259
           |||||||||||||||||||
Sbjct: 219 atgtgaatgaatgcaggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)