BAC Information

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BAC

Clone NameMSMg01-397A02
Chromosome6 (Build37)
Map Location 55,185,177 - 55,185,588
singlet/doubletsinglet
Overlap geneC330043M08Rik
Upstream geneChn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt
Downstream geneAqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397A02.T7 (MSMg01no397_a02.b1)MSMg01-397A02.TJ (MSMg01no397_a02.g1)
ACCAG497446AG497447
length727820
length of high quality
(start - end)
414 (48 - 461)190 (79 - 268)
definitionCHROMAT_FILE: MSMg01no397_a02.b1 PHD_FILE: MSMg01no397_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:17 2005CHROMAT_FILE: MSMg01no397_a02.g1 PHD_FILE: MSMg01no397_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGATCCG
CGGAATTCTCCCACTTGGCTGCTATTTGGGTTAATCAAGTGCAGTCAGGA
GAAAAGGGGTCCAATCCTACAGATGGGATGAGATGGCATTTGCCTCAAGC
TCTCTCCACCCCAGCCCCTAAGCACTCACTCCTCAGGGGGACTCAGAATA
GGAAAAAGAGGATGCTCCTATATTTAAATCCCAGTCCTTGGAGGGGCTAA
GCACACAAGCTCCCATTCTTCTCCATGACCCACCATAACTCTGCAAGCAT
CAGAAATGCCTCCAGACAGCAGTTGGCTGCAGGCTTAGAGAGGAGGGCTA
AGAAAGAATAGGAAAGCTGCCTCCAGAGCTAGGACTAAGATCCCAGGCAC
TGCAGACAGCATAGTCCCCCAAAAATCTTAGGCTTGGGGGACAATGAAGA
ACAATGAATGATTTCCAGGCACAGTAAGGGGTTCACTAATGCCGCTCAGC
CCTCAAACAGCCCATCTCTAATTCATAAAGCCATCTCCTCTAAGATCCTA
TAGTACTTCAGCTATTAACATTCATAAGCCCTGACACAGAGAGAGACCGA
TTCTGAGAGGTACCGATTGACCGCATGACCGGCCTATTTGCACCTCGATT
GTGCCGGTATTATATTCTCTATTATTATATAAGGAACCGGTCTGACCCGC
CCTCGTTCTGATATGTGCAACCTATTC
CGTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCTCGGCAACTACAGGGTG
GCTCATGACCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTCTGAAG
AGAGCAGTAGCGTACTCATATACACATAAAATAAATAAATAATATATTCA
TATATAATATATAAATTTTATTTATATAATATATATTTAAAGATTTATTT
AATATTATAATTAAGTACACTGGAGCTGCCTTCAGATTCCCCTTATGAGG
CTGTTAGATCTCATTATGCCTGTTTGTTTTCTACCCCGCGCCGGACCGTC
CTCTGATTTTATTACTTTCCTCACCCCTCTCTTCCGTTCTTACTTTTTTC
ATCCTCTCTCTTTTTCTTTCTTTTTCTTCCTTTTTCTCCCAACTTTCTTT
TTCTCTTACCTTCTCCCCTCTTTTTTTTTTTCCAAACACCCCACCCTCCT
TTTCCCCTTCTTGTTATCTTTCCCGCTTCTTGCCCCTCCTTCCCCCGCTT
TTTGTCTCCTTCCCCTTTCCCGCTTTTCCTCTTTCCCTCACTTTTTCCCT
TTCTCCCCCTCGTCTCCCCCGTCCCCTTCTCCCATTAATTAACCTCCCTT
CTTTATCATTCTCCACTCTACCCCCCCTTTCTTCTCCTCTATTTGTCTCC
CCTCCTCTATATCATCCCTCATACACTTTGTGCCCCCTTCTCTACTCTCC
CTTTTTCCTTCGCATCTCTTCTCTTCATCGCTTCCACTCCTTCCTTTTTC
CTCTTCTTTTATTTATTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_a02.b1 MSMg01no397_a02.b1 CHROMAT_FILE:
MSMg01no397_a02.b1 PHD_FILE: MSMg01no397_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:17 2005
         (414 letters)



>mm_chr6_55184972_55185788
          Length = 817

 Score =  770 bits (398), Expect = 0.0
 Identities = 408/412 (99%), Gaps = 3/412 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctcccacttggctgctatttgggttaatcaagtgcagtcaggagaaaaggggtcc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaattctcccacttggctgctatttgggttaatcaagtgcagtcaggagaaaaggggtcc 558

                                                                       
Query: 66  aatcctacagatgggatgagatggcatttgcctcaagctctctccaccccagcccctaag 125
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 557 aatcctacagatgggatgagatggcatttgactcaagctctctccaccccagcccctaag 498

                                                                       
Query: 126 cactcactcctcagggggactcagaataggaaaaagaggatgctcctatatttaaatccc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cactcactcctcagggggactcagaataggaaaaagaggatgctcctatatttaaatccc 438

                                                                       
Query: 186 agtccttgga-ggggctaagcacacaagctcccattcttctccatgacccaccataactc 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agtccttggagggggctaagcacacaagctcccattcttctccatgacccaccataactc 378

                                                                       
Query: 245 tgcaagcatcagaaatgcctccagacag--cagttggctgcaggcttagagaggagggct 302
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 377 tgcaagcatcagaaatgcctccagacagcacagttggctgcaggcttagagaggagggct 318

                                                                       
Query: 303 aagaaagaataggaaagctgcctccagagctaggactaagatcccaggcactgcagacag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aagaaagaataggaaagctgcctccagagctaggactaagatcccaggcactgcagacag 258

                                                               
Query: 363 catagtcccccaaaaatcttaggcttgggggacaatgaagaacaatgaatga 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 catagtcccccaaaaatcttaggcttgggggacaatgaagaacaatgaatga 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 817
Length adjustment: 9
Effective length of query: 405
Effective length of database: 808
Effective search space:   327240
Effective search space used:   327240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)