BAC Information

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BAC

Clone NameMSMg01-397C05
Chromosome6 (Build37)
Map Location 119,548,887 - 119,549,160
singlet/doubletsinglet
Overlap geneErc1
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
Downstream geneLOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397C05.T7 (MSMg01no397_c05.b1)MSMg01-397C05.TJ (MSMg01no397_c05.g1)
ACCAG497548AG497549
length851781
length of high quality
(start - end)
63 (46 - 108)275 (78 - 352)
definitionCHROMAT_FILE: MSMg01no397_c05.b1 PHD_FILE: MSMg01no397_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:27 2005CHROMAT_FILE: MSMg01no397_c05.g1 PHD_FILE: MSMg01no397_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCGCGGA
ATTCCAGGGCTATACCGAGAGTCTCTGACTCAAGGAGAGAGGGGGAGGGG
GGAGGGGCATCCTCTATTCTTCTCCCTAAAATTTATGATAACAAAACTGG
TTACTACCCCTCTAACACGTCTTTTCATCGTTAATGCTAAAACTCCCCGC
GCGACCACTTCCCTTAATTTTATCGTAAGGAGCGAATTGCGCGCGGACGT
GCACCGCTTTTCCCCTTTTTTCCTTGAACAGTAGACTGTTCCGCGATATA
CATACATTATATCACTCCAAACCGAAAAGCGCCGTGTAACGGCTTTATTT
TTTTCCCCGGATAAAAGCCCCATATTACCTCACTTCACCCAGTTCTCCTA
CTCCTTTAACCTTTAACTTTCGCTATCCTGATGAATAAAATATGGATTCG
TCCCCCCCCATGTCCCCAGAGTCTATAGACTTCTGCGGCGCCATGGTCTA
TAATAAACAGGACACCACGACACCTACCGGTGTGTTCTTGAACACACATC
TCTTACTCCTCGCTCACGTACGCTATGACATACATAACCTGATTCCAACT
ATATCGAACACCCTGCCCGCTAACTTCTTTCCGTTCGTATCCCTCTCCCT
ATGTCTCCTAACATCCTCGTATACCCTTTTCAAATTCCCTCGGTCCATTA
CCATATGACTAACCACCCGTGAATCGCCACAATTACCTAAGCCCTCGTAC
AACCATACCCACGCAGCAAACAACCGATACTCTGCCGTATAGCGAAGTGC
GACGTGCGCCTAATTAAAAATTAACCGTATTCACGTTCATCCGTAACTAC
N
CTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTAAGACAGGTGTGCCTGGGA
CATTAGTCAGTCAATTAATAGTGGGACTTTCCTGGTACATTCTATATTGA
AAGGCAGTGGACAGTAACCCAAAAAAAAAAAATCAAAACTACCCACTAGT
ATTTATTCAGTTAATATATGAACAGCAAATCTGCCTCTGACAATGTCAGC
AAGTAAAAAAGAACACAGTGCTTTTATAGCCGATTCAGAATTGTAAGCAG
CCACAGAAGACTCTTGGTAGATGGAATACTAATTTTCTAGGAAGACTGAG
AGTAGCTGACACATATATACTAAACTTTTAAAGGGTGCGGGCATGTGTGT
GATATTATTACCACTTACCTCTATCTTATTTCTCTCCTCCTCCTCTTTTA
ACCTCCTTTCCCCTCTTTTACTATTTTTCTCTCCCCTCTACCTTTTTTAC
CCCCCTCTATCTCTCCCTTTTCTGTCTCTTTCACCCATTTTACATCCATT
CTCAAACATTACCTTTTTTTTTCCTTTTTTTTCTTTCTTCCCTTACGCCT
TCTTCCTACCTTTATTTTTTTATTAGATTCCTTCATTCCCCCTTTTTTAT
CCTCCTCCCTTCTGCTTTTTTTTCCGTTTTTATTTCACCCACATTTTATT
CACCCTCCCCAACTTATTCGTAATTCTCGCCCCCTCTCCTTTAATCTTTT
ACCCTCCTCCACTTCTTTAATATCTCTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_c05.g1 MSMg01no397_c05.g1 CHROMAT_FILE:
MSMg01no397_c05.g1 PHD_FILE: MSMg01no397_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:28 2005
         (275 letters)



>mm_chr6_119548687_119549360
          Length = 674

 Score =  501 bits (259), Expect = e-146
 Identities = 271/275 (98%), Gaps = 1/275 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtaagacaggtgtgcctgggacattagtcagtcaattaatagtgggactttcctggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cagtaagacaggtgtgcctgggacattagtcagtcaattaatagtgggactttcctggta 415

                                                                       
Query: 61  cattctatattgaaaggcagtggacagtaacccaaaaaaaaaaaatcaaaactacccact 120
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct: 414 cattctatattgaaaggcagtggacagtaaccc-aaacaaaaaaatcaaaattacccact 356

                                                                       
Query: 121 agtatttattcagttaatatatgaacagcaaatctgcctctgacaatgtcagcaagtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agtatttattcagttaatatatgaacagcaaatctgcctctgacaatgtcagcaagtaaa 296

                                                                       
Query: 181 aaagaacacagtgcttttatagccgattcagaattgtaagcagccacagaagactcttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aaagaacacagtgcttttatagccgattcagaattgtaagcagccacagaagactcttgg 236

                                              
Query: 241 tagatggaatactaattttctaggaagactgagag 275
           ||||||||| |||||||||||||||||||||||||
Sbjct: 235 tagatggaaaactaattttctaggaagactgagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 674
Length adjustment: 9
Effective length of query: 266
Effective length of database: 665
Effective search space:   176890
Effective search space used:   176890
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)