BAC Information

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BAC

Clone NameMSMg01-397E09
Chromosome6 (Build37)
Map Location 99,614,171 - 99,614,606
singlet/doubletsinglet
Overlap geneEif4e3
Upstream geneLOC665963, LOC665979, Foxp1
Downstream geneGpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp, Shq1, LOC625221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397E09.T7 (MSMg01no397_e09.b1)MSMg01-397E09.TJ (MSMg01no397_e09.g1)
ACCAG497652AG497653
length807816
length of high quality
(start - end)
409 (69 - 477)245 (75 - 319)
definitionCHROMAT_FILE: MSMg01no397_e09.b1 PHD_FILE: MSMg01no397_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:39 2005CHROMAT_FILE: MSMg01no397_e09.g1 PHD_FILE: MSMg01no397_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCAGATCATTGCCGTAGTAGAGGCCTAGGGGTCAACCTCAGGTATCTT
TTCCTCAGGAATTCCCCCCACACCCATCTGCTTTGGTCCTCTCTTACCAG
GCTGCAGCATAGGCCAAATAAGGATAGGCTGGGTAGCCGGTGGGTGTGAG
CGAGCCACCTGTCTCTGCCTTCCCAGTACTGAGATCATAAGTACGGCCTT
TTACTTGGGCCCTGGGAAAAGGCTGGAGGAATGCAGATCCTCATGTGTGC
ACAGCAGTTTACCAACCCAGCTTGCTCCTCTGCCCCATCAGTTGAAATGC
ATTAAGCTCTTACTTCACATCAGGTTCCCGCTTTACATCCATCACTCACA
ATAGCCCTGGGCAGCAAATGCCACAGTTGTGTTCACTTAACACTGGAGTG
CAGCTGGGTGAGGCTGGGCAAGGTGGTGGTGGTGGTGCCTCCCTTTATCC
TTGTCCCTTCTTTCTCTCTCCCTCTTTCTCCTTCTTTTCCTTCCCTCTTT
CTTTCTCTTTGTTTTCTCTGCCCTTTTTTTCTTTTCCTTTCTATCCTCCT
CCTATTTCCCCCCCCTTCCTCCTTTCTTTTTTTTCACCTTCTTCCTTCTT
ATTCTACTTCCCTCTCCACTCCTTTTTCCTCCTTTGTTCCTTTCCCTCTT
GTTCTCTACTTTCGCTCCTGCTTTCATACCTAACTCGGTCCTATTACCTT
CCCTCTTCTCCNCCTTATCATTTACTCTATCCTAATCTCTCTCCTCCTCT
ACCTTCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGGTACTTCTCTATTGCCATAAGAC
ACCATGACCAAAGCAACTGATATAAGAGTTGATTGGGCCGGGCAGTGGTG
GTGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGTGAATTTCT
GAGTTCGAGGCCTGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC
TACTCAAAGAATGTCTTGAACCACCACCAACCCCAAAAAAGAGTTTATTG
GAAGCTTATCGATTCAAAGGTTTTGTTTGCATAGCTATAGNCAGAAAGGC
ATGGCACTAGAGCAGTATCACCTGAGTAATGAGAGAGAGAGAGAGAGAGA
GACAGAGAGATTGACCCCCCCCCCTTTTTCCTCTCTCTTATCTCTTTCCT
CCCTCTCTTTTTTTTCCTACATTCTTTTCTTTATTCTTTTTGTTCTTTAT
CTTCCCTTTTCTTTCCCCCTCTCTCCCTTCTTTCTCTTTTTCTCCCTCCT
TTCCCTCCCTTTCTCTCTTCCTTCTCTATCTCTTCTTTTTTTTTTCCTTT
ATTTTTCTCTTCCCTCCACTTCTCTTTCTCTCTTCCCCTTTCTTTCTTCT
CTAACTCTCTCCTTCCTTTCCCCTTTTTTTTTCTTTATCCCCCCTCTCTC
TTCTGTACCTTTTATTTTTACCCCCCCTCCTCTATCCACCTCCCCTTTCT
TATACCTTTTCCCCCCCCCCCTACCTTCCCTTTCTTCCTCCCCCCCCTCC
TTTTTTTTTCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_e09.b1 MSMg01no397_e09.b1 CHROMAT_FILE:
MSMg01no397_e09.b1 PHD_FILE: MSMg01no397_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:39 2005
         (409 letters)



>mm_chr6_99614001_99614809
          Length = 809

 Score =  692 bits (358), Expect = 0.0
 Identities = 402/436 (92%), Gaps = 30/436 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagaggcctaggggtcaacctcaggtatcttttcctcaggaattccccccacacccatc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 171 gtagaggcctaggggtcaacctcaggtatcttttcctcaggaatgccccccacacccatc 230

                                                                       
Query: 61  tgctttggtcctctcttaccaggctgcagcataggccaaataaggataggctgggtagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tgctttggtcctctcttaccaggctgcagcataggccaaataaggataggctgggtagcc 290

                                                                       
Query: 121 ggtgggtgtgagcgagccacctgtctctgccttcccagtactgagatcataagtacggc- 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 291 ggtgggtgtgagcgagccacctgtctctgccttcccagtactgagatcataagtacggcg 350

                                                                       
Query: 180 -----------------------------cttttacttgggccctgggaaaaggctggag 210
                                        |||||||||||||||||||||||||||||||
Sbjct: 351 tgagtacttgctacatcactaggcctggccttttacttgggccctgggaaaaggctggag 410

                                                                       
Query: 211 gaatgcagatcctcatgtgtgcacagcagtttaccaacccagcttgctcctctgccccat 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaatgcagatcctcatgtgtgcacagcagtttaccaacccagcttgctcctctgccccat 470

                                                                       
Query: 271 cagttgaaatgcattaagctcttacttcacatcaggttcccgctttacatccatcactca 330
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 471 cagttgaaatgcattaagctcttacttcacaccaggttcccgctttacatccatcactca 530

                                                                       
Query: 331 caatagccctgggcagcaaatgccacagttgtgttcacttaacactggagtgcagctggg 390
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaatagccctgggcagcaaataccacagttgtgttcacttaacactggagtgcagctggg 590

                           
Query: 391 tgaggctgggcaaggt 406
           ||||||||||||||||
Sbjct: 591 tgaggctgggcaaggt 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)