Query= MSMg01no397_i01.b1 MSMg01no397_i01.b1 CHROMAT_FILE:
MSMg01no397_i01.b1 PHD_FILE: MSMg01no397_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:57 2005
(551 letters)
>mm_chr6_33528233_33529183
Length = 951
Score = 1031 bits (533), Expect = 0.0
Identities = 545/551 (98%), Gaps = 4/551 (0%)
Strand = Plus / Plus
Query: 5 gaattcactcttgtagcagcataacatggatagaagctggtgatggtagcagttgaattt 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcactcttggagtagcataacatggatagaagctggtgatggtagcagttgaattt 260
Query: 65 catttaaaacaac----caaacaaacaaccaaacaaccaacaaacagacaaaaccccaaa 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttaaaacaaccaaacaaacaaacaaccaaacaaccaacaaacagacaaaaccccaaa 320
Query: 121 accccactagggtggtgctggtagaagcatatattccaatttctgaagtaatatccagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accccactagggtggtgctggtagaagcatatattccaatttctgaagtaatatccagct 380
Query: 181 ttctatattctaaactctctgcaactaattctctcaacaaaacagtgatgttaacttatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctatattctaaactctctgcaactaattctctcaacaaaacagtgatgttaacttatt 440
Query: 241 agtgcctcagcatgtgagcttggggattacttcctgcactgtgaccctttgatatttcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgcctcagcatgtgagcttggggattacttcctgcactgtgaccctttgatatttcag 500
Query: 301 ctaattaccaattaagagccatttgaggaaggaatgtaagtccaggtgggcattgcaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaattaccaattaagagccatttgaggaaggaatgtaagtccaggtgggcattgcaaaa 560
Query: 361 tctactttaagacttgtgatagcatcaagaaaacagcaattttgtactttgcacaaatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctactttaagacttgtgatagcatcaagaaaacagcaattttgtactttgcacaaatat 620
Query: 421 gtgtcagtatcttgaaataaaatcctgctagaattctggtatactcctttaagacaatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtcagtatcttgaaataaaatcctgctagaattctggtatactcctttaagacaatta 680
Query: 481 tcttctcagtgactcagtagcgcttaatggaaaacatgactgctactagcttcaaaccag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcttctcagtgactcagtagcgcttaatggaaaacatgactgctactagcttcaaaccag 740
Query: 541 ctattctgagg 551
|||||||||||
Sbjct: 741 ctattctgagg 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no397_i01.g1 MSMg01no397_i01.g1 CHROMAT_FILE:
MSMg01no397_i01.g1 PHD_FILE: MSMg01no397_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:57 2005
(496 letters)
>mm_chr6_33563512_33564406
Length = 895
Score = 820 bits (424), Expect = 0.0
Identities = 478/496 (96%), Gaps = 1/496 (0%)
Strand = Plus / Minus
Query: 1 aactaaaacaaagcaggcatggattgggcagctagcacatgccaggaccttgtacacatg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 695 aactaaaacaaagcaggcatggattgggcagcaagcacatgccaggaccttgtacacatg 636
Query: 61 ccacataactgaatgccgagaacactgcagtgagttggcccacaatacagatgagtaaag 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 635 ccacataactgaatgccgagaacactgcagtgagttggcctacaatacagatgaggaaag 576
Query: 121 aaaccattggaagtaagcacttgcccagagtcagaattttagcttaagtgggagactttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aaaccattggaagtaagcacttgcccagagtcagaattttagcttaagtgggagactttg 516
Query: 181 taatatagatcacacagagagtaggagtagccatcacagcttccataccctgaacaaagt 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 515 taatatagatcacacagagagtaggggtagccatcacagcttccataccctgaacaaagt 456
Query: 241 ccatttattttattagaaaaatgaataccacgtctgttatgtatagtgtttacaattaca 300
|| |||| || | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 455 ccttttacttcacaagaaaaatgaataccatgtctgttatgtatagtgtttacaattaca 396
Query: 301 attgtaaatttgtactaccagacgttgaaataactaattcctaaaaaaacctagaaaaat 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 395 attgtaaatttgtactaccagaggttgaaataactaattcctaaaaaaacctagaaaaat 336
Query: 361 atcaccagaaacttaagtcttaaaaccaataaaagaaatcttcatatagaaccagagtgc 420
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 335 ttcaccagaaacttaagtcttaaaacaaataaaagaaatcttcatatacaaccagagtgc 276
Query: 421 aatgccaaattagggagctgtgagtggcaatatggcttagtgggcaacagagcttgcttt 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct: 275 aatgccaaattagggagctgtgagtggca-tatggcttagtgggcaacagagcctgtttt 217
Query: 481 gcgtgactgatgatct 496
| ||||||||||||||
Sbjct: 216 gtgtgactgatgatct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space: 430110
Effective search space used: 430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
