BAC Information

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BAC

Clone NameMSMg01-398B05
Chromosome6 (Build37)
Map Location 117,337,171 - 117,337,415
singlet/doubletsinglet
Overlap geneEG640142
Upstream geneMarch8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422
Downstream geneLOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398B05.T7 (MSMg01no398_b05.b1)MSMg01-398B05.TJ (MSMg01no398_b05.g1)
ACCAG498265AG498266
length788836
length of high quality
(start - end)
436 (40 - 475)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no398_b05.b1 PHD_FILE: MSMg01no398_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:43 2005CHROMAT_FILE: MSMg01no398_b05.g1 PHD_FILE: MSMg01no398_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATT
CCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAA
TGCTTTTTCTGCATCCAACGAGATGATCATGTGGTTTTTGTCTTTGAGTT
TGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATCCC
TGCATTCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAAT
GTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGA
TATTCATAAGAGAAATTGTTCTGAAGTTCTCTATCTTTGTTGGATCTTTC
TGTGGTTTAGGTATCAGAGTAATAGTGGCTTCTTAAAATGAGTTGGGTAG
AGTACTTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGGAATTA
GATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTCCT
GGGCTTTTTTTGGCTGTGAGACTATTTTATAACTGCTTCTATTTCTTTAG
TGGATATGTGACTGCTTAGAAAGTTAACTTGATCCTGATTCCCCTTTGGT
ACCTGGTTTCCGTCCCGAAAATTTGTCCTTCTTCTTCCAGGTTTTCCCAG
TCTTGCTTGAATACACCCTTTTTTATTAAGGTCCCGATTGTTGTTTTCTG
TTATTTTTTTTTGAATTTTTTAGCTTAGTTTTTTTCTTTTTCCATTCTCA
ACCCTTTTTATTTTTTTATATTTTTTCCCTCCTTGCCC
AATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATAAAGCTGATTGACATCCTCCTCAAA
TTCCTTGACCTCTTTGATAAAATATGTGATTGTTTTTTTCAAATTCTTGT
TCTGGGGCTTATCTAGGTAGTTGTCATCAAAGAACAATTCTGTGGAGGCT
TGTGGGCCAGTGCTGGGGTTCTGTGATCAGAGATGGACCAGGTAAAGCTT
GTAGATGAGATGTTTGATTGGACTAGGCATGGATAGCACCAAATCATGGT
TCCCGAGCTTGGTCTGTGTATTTTTTAGATGGCAGTGGGTGGGGGAAAGG
GTGCNACTCTTTTTTCCCCCCCCCCTTTCCCTCCTCTTCCCCCCTTTTTC
CCTCTTTTTCTCTCTTTTCTCCCCTCCGATCTTTTCTTTTTTTTTTCTTT
TCTCTTCTTCTTCCTCTTTTTTTTTTTTTTTCCCCCTTCTTCTCTTCTTT
CCTCTTTCTTTTCCCCTCTTTTTCTCACATTCCTCCCTTGCTCTTCTTTT
TCTTATCTTCTCTCCTTTCCCCTTCTTTTTTTCTCTTACTTCTTTTTTTA
TTTTTCTCCCTCCTTTTCCTTCTTCTTTTCTTTTCCACTCTCTTACTCCT
CCTTTCTACTCTTCTTTTTTATTTCTTATTCTCTCTTTTCTCTCTCTTCT
CTTTTCCTCTCCTATCTACTTTTCTTTTCTTCTTCTTCTCTCTCCTTTCC
TCCCTCTCCACTTTTTCTTTTTCTCTCCCTCTTTTTCTCCACTCCTCTTT
CCCCTTACTCCCCTCTCTTCCTTTCATTCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_b05.g1 MSMg01no398_b05.g1 CHROMAT_FILE:
MSMg01no398_b05.g1 PHD_FILE: MSMg01no398_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:43 2005
         (245 letters)



>mm_chr6_117336971_117337615
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaagctgattgacatcctcctcaaattccttgacctctttgataaaatatgtgattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaagctgattgacatcctcctcaaattccttgacctctttgataaaatatgtgattg 260

                                                                       
Query: 61  tttttttcaaattcttgttctggggcttatctaggtagttgtcatcaaagaacaattctg 120
           ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 261 tttttttcaaattcttgttctggggctcatctaggtagctgtcatcaaagaacaattctg 320

                                                                       
Query: 121 tggaggcttgtgggccagtgctggggttctgtgatcagagatggaccaggtaaagcttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaggcttgtgggccagtgctggggttctgtgatcagagatggaccaggtaaagcttgt 380

                                                                       
Query: 181 agatgagatgtttgattggactaggcatggatagcaccaaatcatggttcccgagcttgg 240
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatgagatgtttgattggaccaggcatggatagcaccaaatcatggttcccgagcttgg 440

                
Query: 241 tctgt 245
           |||||
Sbjct: 441 tctgt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)