NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATAGTCTGCTATATCAGCTAGATTGAGGCTACCCAGTGGTTTG
TAGAAGGAAAAAAAAATACAGATAGGCAAAGAAATAAAATTCTAATAAAT
GAATCTAACCTGTGAAAAAAAAAAGTGGTTCTGTTACCTGAAGGTTTTCA
GATGTTATTATTTCTGAAACAAACTAACAGATATGTAATCATTTTCTTCT
TTGGTGTCATATGCTCCCCGCAGCTTTTTCCTAGTATAGAAGAAAATTTC
CCACAGGCTTTGGATGAAGAATCAGGACATACCAAGTATTCTGTGAATGT
GAATGCACTCAATAATGAGGCAGTTTGTCATAATTAATACTTGGTCCAGA
ACCAGACTGCAAAGCCGGCTGTGCCCTTCGCATACATAGAGTATGTTTGA
AACTATTGGAAACTTCAGAGAAGCAAGGAGTAATCAAATTATTAAAATTT
CAGACAGGATGAGAAAGATTCTAAGTTTTATAATTAGATTACAGATACCA
GTTAGGAGGCTAAATTCAACAGACGAACATCACTTCTTGAACATGTAGAT
GTTAAATTTTCTACATTACTGGCAATTGCCAGTTGTTATACCAGCTGGGA
AGATTCCTAAATGCCTGTTGTGGCAAAGGAAGGCAGNTCCTTATTTTTCT
TCACTACTTTGTGTGTTAAAATTCACTGGATGGAAACACTCATTN

NCCCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAGTTTCACCACAGT
GGTTAGGCACTACAAGAATGTGTCTTTGGGGAATACATAGTTTCTGGTTG
GTGTTACACCTAATCATTTTAATGGTTTCTGAATATCATAGGAAAAAGAG
CATCATATAGGTGCACAGGGCACTCATTTCTGAGCACTCCCACAAGCTTG
CACATCAAAGAGTCTAGGCTGGCTTTGTTATGTCTGGTCATGAGAGGAGG
ACTCAATTCAGAGTTTCTAGGATTCTCTTCTGCTAGACTGTCAACCCCAT
TGGAAGAACAACCTAGATTGGCCTGAACACCCAGTTCTCCCAGAGTCTAG
ACCACCAACCATGGAGTGTACCTGGAAGGATCCATGGCTCCAGATGTATA
TGTAGCAGAGGAGGCCTTACCTGACAGCAGTGGGAAGGGAGGCCTTTGGT
CCTGGGGAGATTTGATGCCTCAGTGTAAGGGATACAAGAGCAGTGGTGAC
AGGAGTGTGTGTGTGTGTGTGTGTGTTGTTGTTTTTTNTTTTTCTTTCCT
NTTTTTTTTTTTGCTTTTTTTCCTGCTCGCTTTTTCTCTTTCGCCCCTTT
TCTTTTTTTGTTCCCTCGCTTCGTGCTTTCCCCCCTTCCTCCCTCCCTCT
TTTTCTTTTTTCCCCTTTTTTCTCTGCTTTCCTTCCTTTCCTCG

Query= MSMg01no398_g16.b1 MSMg01no398_g16.b1 CHROMAT_FILE:
MSMg01no398_g16.b1 PHD_FILE: MSMg01no398_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:08 2005
         (602 letters)



>mm_chr6_36490110_36491111
          Length = 1002

 Score = 1104 bits (571), Expect = 0.0
 Identities = 592/599 (98%), Gaps = 2/599 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatagtctgctatatcagctagattgaggctacccagtggtttgtagaaggaaa 64
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctataggctggtatatcagctagattgaggctacccagtggtttgtagaaggaaa 264

                                                                       
Query: 65  aaaaaa-tacagataggcaaagaaataaaattctaataaatgaatctaacctgtgaaaaa 123
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 aaaaaaatacagataggcaaagaaataaaattctaataaatgaatctaacctgtggaaaa 324

                                                                       
Query: 124 aaaaagtggttctgttacctgaaggttttcagatgttattatttctgaaacaaactaaca 183
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaa-gtggttctgttacctgaaggttttcagatgttattatttctgaaacaaactaaca 383

                                                                       
Query: 184 gatatgtaatcattttcttctttggtgtcatatgctccccgcagctttttcctagtatag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatatgtaatcattttcttctttggtgtcatatgctccccgcagctttttcctagtatag 443

                                                                       
Query: 244 aagaaaatttcccacaggctttggatgaagaatcaggacataccaagtattctgtgaatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagaaaatttcccacaggctttggatgaagaatcaggacataccaagtattctgtgaatg 503

                                                                       
Query: 304 tgaatgcactcaataatgaggcagtttgtcataattaatacttggtccagaaccagactg 363
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgaatgcactcaataatgaagcagtttgtcataattaatacttggtccagaaccagactg 563

                                                                       
Query: 364 caaagccggctgtgcccttcgcatacatagagtatgtttgaaactattggaaacttcaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caaagccggctgtgcccttcgcatacatagagtatgtttgaaactattggaaacttcaga 623

                                                                       
Query: 424 gaagcaaggagtaatcaaattattaaaatttcagacaggatgagaaagattctaagtttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaagcaaggagtaatcaaattattaaaatttcagacaggatgagaaagattctaagtttt 683

                                                                       
Query: 484 ataattagattacagataccagttaggaggctaaattcaacagacgaacatcacttcttg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ataattagattacagataccagttaggaggctaaattcaacagacgaacatcacttcttg 743

                                                                      
Query: 544 aacatgtagatgttaaattttctacattactggcaattgccagttgttataccagctgg 602
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 744 aacatgtagatgttaaattttctacattattggcaattgccagttgttataccagctgg 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)