Query= MSMg01no398_i15.b1 MSMg01no398_i15.b1 CHROMAT_FILE:
MSMg01no398_i15.b1 PHD_FILE: MSMg01no398_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:18 2005
(459 letters)
>mm_chr6_44521881_44522740
Length = 860
Score = 630 bits (326), Expect = 0.0
Identities = 425/458 (92%), Gaps = 5/458 (1%)
Strand = Plus / Minus
Query: 5 gaattccagcctggctctagaggcccctgtgtatcttgcccttgagtcagtctgctatag 64
||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gaattgcaggctgggtctggaggcccctgtgtatcttgcccttgagtcagtctgctatag 601
Query: 65 cttagaatttcctctctcccctccctcatttgtggcctgctagtttagctggtttgcctg 124
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cttagaatttcctctctctcctccctcatttgtggcctgctagtttagctggtttgcctg 541
Query: 125 taaagcaagtttggccttg-cccctgccacaaaccctgcttgctgccttt-cccctgacc 182
||||| ||||||| ||||| |||| | |||| |||||||||||||||||| |||||||||
Sbjct: 540 taaaggaagtttgcccttgtcccc-gacacagaccctgcttgctgcctttccccctgacc 482
Query: 183 tgtggcacctctttctcagctggcatgctagagagctcccagaggagctgctgccaccca 242
| ||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct: 481 tatggcacctctttctcagctggcatgctagagagctaccagagaagctgcttacaccca 422
Query: 243 gctaccagtctgtgccatgtgtgttttacagtcagacgtgcccaaaccaaccactgggtt 302
||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||
Sbjct: 421 gctcccagtctgtgccatgtgtgttatgcagtcagacgtgcccaaaccagccacttagtt 362
Query: 303 ccacattttcagctaccagaatgcagaagcccacaaacacaaaatgacatattgatttgt 362
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 361 tcacattttctgctaccagaatgtagaagcccacaaacacaaaatgacatattgattggt 302
Query: 363 aagaagtttctcccgttggcaggaggaaccctatatgcccagatagcgcctggacagact 422
||||||||||||| ||||||||||| |||||||||||||||||||| |||||| ||||||
Sbjct: 301 aagaagtttctccagttggcaggagaaaccctatatgcccagatagtgcctggccagact 242
Query: 423 cttggactaaggtgttggctttcaat-ctccaggtctt 459
|||||||||||||||||||||||||| | |||||||||
Sbjct: 241 cttggactaaggtgttggctttcaatgc-ccaggtctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 860
Length adjustment: 10
Effective length of query: 449
Effective length of database: 850
Effective search space: 381650
Effective search space used: 381650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_i15.g1 MSMg01no398_i15.g1 CHROMAT_FILE:
MSMg01no398_i15.g1 PHD_FILE: MSMg01no398_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:18 2005
(516 letters)
>mm_chr6_44374408_44375324
Length = 917
Score = 969 bits (501), Expect = 0.0
Identities = 513/517 (99%), Gaps = 1/517 (0%)
Strand = Plus / Plus
Query: 1 attacactgtcctctttaccagtacttgacacaacacccatattctgaacatatccaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacactgtcctctttaccagtacttgacacaacacccatattctgaacatatccaaat 260
Query: 61 tgttcgtaattgctcaaatatcattattctgtttttagagacagtattagtcagaattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcgtaattgctcaaatatcattattctgtttttagagacagtattagtcagaattta 320
Query: 121 tgggtcccacttgccattattatttccatcagcagttatttatctgtggtcccctgaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggtcccacttgccattattatttccatcagcagttatttatctgtggtcccctgaaac 380
Query: 181 atgcttaggaaataatgcactaacaccacagccataatgagatctgtttacattcctggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcttaggaaataatgcactaacaccacagccataatgagatctgtttacattcctggc 440
Query: 241 cagttcaggataataggctacatgtatgatcaaggacctattgataacttcttcacattt 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggccaggataataggctacatgtatgatcaaggacctattgataacttcttcacattt 500
Query: 301 gtttcaacccattattaattagttggttgcattattgtaaagatttgaatgtgttccaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttcaacccattattaattagttggttgcattattgtaaagatttgaatgtgttccaca 560
Query: 361 tactttgccttctgtattcttatcgattgaaaaattaatctatatctataaaactatttt 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactttgccttctgtattcttattgattgaaaaattaatctatatctataaaactatttt 620
Query: 421 attcccatttgtgtcttcatacatcaatggtgattagaataatctggagaatg-agaagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 attcccatttgtgtcttcatacatcaatggtgattagaataatctggagaatgcagaagt 680
Query: 480 tattatacaattttgtattatgaaatcagtattgtag 516
|||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattatacaattttgtattatgaaatcagtattgtag 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 917
Length adjustment: 10
Effective length of query: 506
Effective length of database: 907
Effective search space: 458942
Effective search space used: 458942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
