BAC Information

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BAC

Clone NameMSMg01-398K08
Chromosome6 (Build37)
Map Location 141,662,733 - 141,662,927
singlet/doubletsinglet
Overlap geneEG435927
Upstream geneEG664868, LOC664875, Pde3a, Slco1c1, Slco1b2
Downstream geneSlco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398K08.T7 (MSMg01no398_k08.b1)MSMg01-398K08.TJ (MSMg01no398_k08.g1)
ACCAG498699AG498700
length765756
length of high quality
(start - end)
199 (126 - 324)246 (75 - 320)
definitionCHROMAT_FILE: MSMg01no398_k08.b1 PHD_FILE: MSMg01no398_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:26 2005CHROMAT_FILE: MSMg01no398_k08.g1 PHD_FILE: MSMg01no398_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TCCAGGACAGTTCGCAGATACACAGAAAAACCCTGTCTCAAAACAAACAA
ACAAACAAACAAACAAACTAACCACAACAAAAACAAACAAACAAACAAAA
AACAAAAAAAAAACCTTCTGAAAATATTCTTATAAATTAGGAATATGGAA
GCCCTATTAAAATGTGTAAGAAAAGCATAATATATTCAACTATTGGTATT
TCATTTGGCAGCAGCAATTCCATGAAAGATTTCAAGAAAATCGAACAGAC
TAGAAGAGCAATGATAGCATGTTTATTATTAGCATTACATCATCTAACAT
CTATATCATAATCATCAAATTCAGCACAAATAAGGAAAGAAATTAAAAAA
AAAAGTAAGTGCAGTACATCATGAAATCACACATTAGGGTTCAGTGTGTA
AAGTTTCTTGCCACTTAGCTTGACAACTGTGTTCAATACCTGGAACCCAC
GTAATGGATAGATACAAAATTTTATGAGATGTCTTGTCATTTTAACATGC
ATGTCATTGTATGCAAACTCACACATACACACACCCTTGTGTACTTACAC
ACACTCACATAAGAAACATTTACGCTAATCCCACCATGTACTTTAAATAA
CCCTAATTCAACTTCCCTTTAAGACACGTTTTTAACACCTAGGGGAAACA
TTATTGAAGCAAGATAGCTGCGAATTGCTACTGTATTTATAAAATCGTGC
AACAGTTCATTCATA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCGAAATTCTCCATCATTCTTTTCCTTATGAATTTGT
TTAACTTCCTTCCCTCATCTTCCTCTTCCTCTTGCCTCTCCCTTCTCTTT
TTCATTATTTCTTTTTTGTTTCTTTCCTTTCTTTTCTTAAAATGTGTTTT
ATATATTTTAGGTGTGTGTGTGTATAAGCACCTTGCATGTCTGGTGCATA
TTTAGATAAGAATAAGGTATCTAATTCCCTGTATTTGGAGTTACAGATGG
TTGTTAGTTACCATGTGATTGTTGTTTAATGAACCCAGGTCCACTATAAG
AGCAGCAAATACTCTTAACCACCAAGGCACCTTTCCAGTCCTGCTTTGCT
TTGTTTTTTGCAGTAAGGGGTTGATAAGTAGCCCAGGCTGGTCTGAAATT
TAATATGTAGCTCAGGCTGGCCTCAAACTTTTGATGATTTCTATAATTCA
TAAAATAACCATCCACCACAACCTAAGGGACTGGTATAACAATCATTTGC
TTGCTTGCTTGCTTGCTTGCTTGCTTGCTTCTTGCTGAATTGTGCTGAAG
AATTCCCTTCCTGCCACCCACAGAGACATACCTAAACTTGCTTTTTTCAA
AGTTTATCTTTTTGACTTCATTTGCCCTCCAGTCTCTATGTGCTGAAAAA
TTCATGTCCTTCCTTTATTCCTGACTGCATATATTTTAAAGTTCGTCTAG
CACTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_k08.b1 MSMg01no398_k08.b1 CHROMAT_FILE:
MSMg01no398_k08.b1 PHD_FILE: MSMg01no398_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:26 2005
         (199 letters)



>mm_chr6_141662532_141663130
          Length = 599

 Score =  364 bits (188), Expect = e-105
 Identities = 194/196 (98%), Gaps = 1/196 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaaaaacaaacaaacaaacaaaaaacaaaaaaaaaaccttctgaaaatattcttataa 60
           |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 202 aacaaaaacaaacaaacaaacaaacaacaaaaaaaaa-ccttctgaaaatattcttataa 260

                                                                       
Query: 61  attaggaatatggaagccctattaaaatgtgtaagaaaagcataatatattcaactattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaggaatatggaagccctattaaaatgtgtaagaaaagcataatatattcaactattg 320

                                                                       
Query: 121 gtatttcatttggcagcagcaattccatgaaagatttcaagaaaatcgaacagactagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatttcatttggcagcagcaattccatgaaagatttcaagaaaatcgaacagactagaa 380

                           
Query: 181 gagcaatgatagcatg 196
           ||||||||||||||||
Sbjct: 381 gagcaatgatagcatg 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)