BAC Information

Click to search

BAC

Clone NameMSMg01-398M13
Chromosome6 (Build37)
Map Location 93,130,673 - 93,131,161
singlet/doubletsinglet
Overlap genenone
Upstream geneMrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866, A730049H05Rik, LOC384461
Downstream geneLOC100043253, LOC665831, Magi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398M13.T7 (MSMg01no398_m13.b1)MSMg01-398M13.TJ (MSMg01no398_m13.g1)
ACCAG498805AG498806
length750829
length of high quality
(start - end)
528 (69 - 596)142 (75 - 216)
definitionCHROMAT_FILE: MSMg01no398_m13.b1 PHD_FILE: MSMg01no398_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:37 2005CHROMAT_FILE: MSMg01no398_m13.g1 PHD_FILE: MSMg01no398_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXCTATTCAAAGAGGACNCGCGGAA
TCTTTTATCCCTGAAGCTTCCTGTGNGGNCTCCAGGAAAGGGTCGGCTTC
CTTCTGCTGCAGTTTTCACCCTGGTCATACAGAGCCCTTCCTAGGATGGT
TGTAGATATTACATAAGACACTGTAGGCAAAGCACTCGACACTTCAAAAA
AGAAGTTTAAGCAAGGCTATTTCTCCACTACTGGTAATTGCTAGTATTCT
CACACCGTGGTCCCATCCGTTGCTGGAATAAGGCTCCTGAAGAAATACTT
CTCTTTGTTTANGTAATTTCTGATTTCTGGTTTTGCTCCTACTTAGAATT
AGATCCCTTAGGAAACACAAAGCCGAGGGAACAGCTCGAAATCTGGGATT
AGACTAACAGCACAGGCAGATCCACCATGGAGCTATGCACACAGTAAATC
CCTCAGCTTCGCTGAACTGTGCACAACTAACATATCTCCCCACTGCAGAT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCT
CTCTCCCCACCCCCACTGGCTGTTTGTAGCATGTTAGGAGCAGACTTAAT
TAAATCCCTAAACAATGAAATGGCAGACTCCAAAGGAGATATATTTATGC
TTGCGTCCAAAACCAACAAAGGAGAAACCATAAATACCCACGTTTTGAGA
CATCTACCCTGATACTGGAATAGGTTCTTTCTGCCCCTAAACTCGGTTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAAGACTGGGGTGGA
ACTATAGAAGTACCAGCGGAAGGCTTTGTTTAGCTCTGTACCCCATTTTT
TTTAAATAGAGCTATTTGGTTTTTTGAGTCCAACTTCTTGAGATATATAT
ATATATATATATATATATATATATATATATATATATATATTGAGAGAGGG
GGGGGGGGGGGGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGTGTGT
TTGAGAGAGAGAGGGGGGGGGGGGGGGGGGGAGAGAGAGAGATATGGGGG
GGGGGGGGGGGGGGTTGGTGGGTGTGCGGGGGGCGGGGGGGGGGGGGGGG
GGGGGAGAGATATATACACACATATGAGAGGGGGGATATATGGGGCGTGC
TGTTTGGGCGCGCCCCCCGGGGGTTTGTGGCGGGGGGCGGGTGCGTGGGG
GGTGGGGGGGGGTTTGGTGGGGGGTGGGGGGTGTGTTGCGTGGGGGGGTG
GGGGGCGGGGGTTCCGTGCGGGGGGGTGGGGGTGTGGCGTGTGGGCGCGT
TGTGTGGGTGTGTGTTCTCGGGGGTGCGGGGACGGGGGCGTGGTGGGGTG
CATTAGATTTGTGGGTGGTGGGGGGGGGGGCGGGGCGTGGGTGGTGGGTG
ATGCGGGGAGGGGGGGGGGTGGTGTTTTTTTTTTTTTGTTGTTGCGGGTG
GTTGGTTCGCGGGGGGGCGGGCCGTCGGGTCGCCGTGCGGTTTTTGGCGG
CTGTTTGGGGGGTGTGGGGCGGGCGGGGCGGCGGGCGCGGGGGCGTGGGG
GGGGGTTCTGGTTGGCGCGTGTGGGCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_m13.b1 MSMg01no398_m13.b1 CHROMAT_FILE:
MSMg01no398_m13.b1 PHD_FILE: MSMg01no398_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:37 2005
         (528 letters)



>mm_chr6_93130473_93131402
          Length = 930

 Score =  820 bits (424), Expect = 0.0
 Identities = 472/489 (96%), Gaps = 2/489 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgtgnggnctccaggaaagggtcggcttccttctgctgcagttttcaccctggtcat 60
           ||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgtgtggtctccgggaaagggtcggcttccttctgctgcagttttcaccctggtcat 260

                                                                       
Query: 61  acagagcccttcctaggatggttgtagatattacataagacactgtaggcaaagcactcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagagcccttcctaggatggttgtagatattacataagacactgtaggcaaagcactcg 320

                                                                       
Query: 121 acacttcaaaaaagaagtttaagcaaggctatttctccactactggtaattgctagtatt 180
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 acactttaaaaaagaagtttaagcaaggctatttctccactactggtaattgctagcatt 380

                                                                       
Query: 181 ctcacaccgtggtcccatccgttgctggaataaggctcctgaagaaa-tacttctctttg 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ctcacaccgtggtcccatccgttgctggaataaggctcctgaagaaaatacttctctttg 440

                                                                       
Query: 240 tttangta-atttctgatttctggttttgctcctacttagaattagatcccttaggaaac 298
           |||| | | |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatggacaagtctgatttctggttttgctcctacttagaattagatcccttaggaaac 500

                                                                       
Query: 299 acaaagccgagggaacagctcgaaatctgggattagactaacagcacaggcagatccacc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaagccgagggaacagctcgaaatctgggattagactaacagcacaggcagatccacc 560

                                                                       
Query: 359 atggagctatgcacacagtaaatccctcagcttcgctgaactgtgcacaactaacatatc 418
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 atggagctatgcacacagtaaatccctcagcttcgctaaactgtgcacaactaacatatc 620

                                                                       
Query: 419 tccccactgcagatctctctctctctctctctctctctctctctccctctctctctctct 478
           |||||| ||||||||||||||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 621 tccccagtgcagatctctctctctctctctgtctctctctctgtctctctctctgtctct 680

                    
Query: 479 ctctctctc 487
           |||||||||
Sbjct: 681 ctctctctc 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 930
Length adjustment: 10
Effective length of query: 518
Effective length of database: 920
Effective search space:   476560
Effective search space used:   476560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)