TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAAGATTCTCGTGAAAAATAGTTATATCAGCTCTTGTATCCAC
CAAATCTTCTATTTCAATACCACTGACTTGCAATTTGAATTTTGGCCTCT
GATCATTAACAGCAGTTTGCCAGAACACACGCTTTCCAATACTTTCAAAC
CCTCCTGATTTTTGCCTTTTGTTTTTGTTTTAAAACTGGAACAGCTTTGC
TTGTGATATAGGAAACAGTAGCAACCGAGCAATCCTATCCCCTGAATTAA
TTTGCATCTCTCTTTTTATTTATTGCCATAATTTTAATTTCTCCTTTAAA
ATCTTCATCTATGATTCTTGGATGCACAATGTATCCTTGGGAAGTCAATC
TACTCCAAGACCATCCCCACTGCTCCAATGTGGAGTTGAGATTATTTCAT
CTGCATGTTACTCCTTGAGTAAAACAGCTTGTAATTTTTGCTTCAGGGGC
TCCCAAGACTCTTTCCTCATGGTAAGAAATTACCATGAATATCTCTTTGT
GACCTACACTCATTGGTCCAGTGGTAACTCTTGCCACACCACCTCCATCA
TCCAATGAAACTGCCTAGATGCTCTTTCTGGTTTATATTTTGAAAAATCA
TTGCCCTTAGAAATATCTTGTACACTGTTTTGTTGCTAATGACCATATTT
TCTCCCAATGAATTACCAAGCATTTTTAGATCTGTAGCCTTCTAA

NCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTACCAGCAAAATTCCTCCTGAAATGGAGAACGAGATTA
CGGGGAAGGAGACAGTATGCCCCATTCTCCAATCCTGATTGATCTGAAAA
GAAAAGTGCTTCAGATCTTGAGTCCATGCACCCGGAAAAAGAGAGCCGGC
TCTGACTCGTCCACATTGGGGCAGACAAGAGCCCGTGCAGGAATTTCTAA
TCTGCATATCTTCCCCAGCTACTGGTGATTTGTTATTTATTATTTCCATC
TGTGTGCAGTGGTGTTTACATGNTTGTGCTTGTGCGAGTGGGGGATGGTA
TACACGTGTGTGCGGAAGCGGCATGTCCGTGTTGGGTGACCTCTGAGAGT
ATCTCATTGTACCCTCAGCCCCAGAATATGGCTAGACTGGCTAAGTTCCC
ATGATCCTCCTCCCCACACAGCACTTAAAGATGGGTGGCCATGCCAGCTT
CTTTTCCTCGGGTGCTGGGAATTTAAACTCCTGTCCCCATGCTTGCTCAG
CAAGCACTTTACCTGCTGAGCCATCTCCTCACCCCTGACTCTTTCGTTTG
ATTTGAGAATTCTCTGTGTCTTCAAAAATACACAGTTTTGGAGCCCATCT
TTAAACAGAAATTCATTCTCCCTCTCCCCTCTCCCCCTTTTCCCTCTCCC
CTCCCCACCTCCCCCTCCTCTCCCCTTCCTCTCCCTTTTCCCG

Query= MSMg01no398_o15.g1 MSMg01no398_o15.g1 CHROMAT_FILE:
MSMg01no398_o15.g1 PHD_FILE: MSMg01no398_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:47 2005
         (563 letters)



>mm_chr6_139993107_139994069
          Length = 963

 Score =  963 bits (498), Expect = 0.0
 Identities = 549/569 (96%), Gaps = 6/569 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcctgaaatggagaacgagattacggggaaggagacagtatgccccattctccaatc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tcctcctgaaatggagaacgagattacggggaaggagacagtaggccccattctccaatc 260

                                                                       
Query: 61  ctgattgatctgaaaagaaaagtgcttcagatcttgagtccatgcacccggaaaaagaga 120
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ctgactgatctgaaaagaaaagtgcttcagatcttgagtccatgcacccggaaaaaaaga 320

                                                                       
Query: 121 gccggctctgactcgtccacattggggcagacaagagcccgtgcaggaatttctaatctg 180
           ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 321 gccggctctgactggtccacattggggcagacaagagcccgtacaggaatttctaaactg 380

                                                                       
Query: 181 catatcttccccagctactggtgatttgttatttattatttccatctgtgtgcagtggtg 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catatcttccccagctattggtgatttgttatttattatttccatctgtgtgcagtggtg 440

                                                                       
Query: 241 tttacatgnttgtgcttgtgcgagtgggggatggtatacacgtgtgtgcggaagcggcat 300
           |||||||| |||||||||||||||||||||||||||| | |||| |||| ||||||||||
Sbjct: 441 tttacatgtttgtgcttgtgcgagtgggggatggtattcccgtgcgtgcagaagcggcat 500

                                                                       
Query: 301 gtccgtgttgggtgacctctgagagtatctcattgtaccctcagccccagaatatggcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccgtgttgggtgacctctgagagtatctcattgtaccctcagccccagaatatggcta 560

                                                                       
Query: 361 gactggctaagttcccatgatcctcct--ccccacacagcacttaaagatgggtggccat 418
           |||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||
Sbjct: 561 gactggctaagttcccatgatcctcctgtccccacacagcacttacagatgggtggccat 620

                                                                       
Query: 419 gccagcttcttttcctcgggtgctgggaatttaaactcctgtccccatgcttgctcagca 478
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccagcttcttttcctcaggtgctgggaatttaaactcctgtccccatgcttgctcagca 680

                                                                       
Query: 479 agcactttacctgctgagccatctcctcacccctgactctttcgtttgatttgagaattc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcactttacctgctgagccatctcctcacccctgactctttcgtttgatttgagaattc 740

                                        
Query: 539 tctgtgt----cttcaaaaatacacagtt 563
           |||||||    ||||||||||||||||||
Sbjct: 741 tctgtgtatgtcttcaaaaatacacagtt 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)