BAC Information

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BAC

Clone NameMSMg01-398P02
Chromosome6 (Build37)
Map Location 121,185,000 - 121,185,239
singlet/doubletsinglet
Overlap genenone
Upstream geneB4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8
Downstream geneUsp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398P02.T7 (MSMg01no398_p02.b1)MSMg01-398P02.TJ (MSMg01no398_p02.g1)
ACCAG498927AG498928
length791772
length of high quality
(start - end)
37 (80 - 116)240 (79 - 318)
definitionCHROMAT_FILE: MSMg01no398_p02.b1 PHD_FILE: MSMg01no398_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:50 2005CHROMAT_FILE: MSMg01no398_p02.g1 PHD_FILE: MSMg01no398_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATAATTTGCGGCCGCTAAAAGAATCACTAAATCGTTAGCTGCAGCG
GAANTCCACGCNGTAACTAAAACACGGTGCCCAAGANCAAGGCTACCTTC
AAGAGGATTAGCTGGAGCTGTACGCATACCTAGAAGAACACAGACATCTT
GACAGGTCAAGGGAATGGGGAGGCGAAAGCCCCATGTTGCATACCCTCAG
GCCCATCCATCTTAGCTCAGGTTCCCAAAGGCTATCACAGCAGAGATGTG
CTTCTCGAGCTCTCATTTCTTTCTCCGCATCGTATAGGAATCATCACAGA
GTGAAAGACACATTCTGGATTTTTTATTTTCCCCAGCTTCGGGAGCTGGG
TGTTTCGAACGGTCTGACTTGACTACCGAGACATCAGAGAACTGTGCCCT
ATGATAATCTCTCTTTTCCCTCCTGTGTTTTATCTTACACTCTTGCCTTC
TTCGGCCTCTATACCTTTTAGAATGACCTCCCTGCCCTATTTCTCCCCAC
GCCCTTATCTGTCTCTGTCCTATGTCATACTATCCTGTCTCTTCTGTCTC
CCCTCTCTCGTCCCCTATCCTTATCCTTCCCTCCTTCTCCTTACCTCACC
CTTCTCCTCTTTTTCCACCCCTTCCCCCTACGCCTGCTTCCTTTGCTTTT
TTCTTTTCCCTTTTCCATATTCTTTCCCCCATCCTTTCTCTATCACCCCC
CCATGCCCTGATCTCCAACCTTCCCCCACCTTCTTCCCACCTACACCCAC
CTTCCTCTCTCTTTTTTCTCTTTTTTCCCACCCCCCCCCCC
TTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAAAATCCCCACCCAAGACTGCCACACTA
GAGAAGGAAAAGGCTGAAGTCTGGTGCCAGCCAGAGAAGAGAGGGCTTTG
CAGAGCCCAGCAACTTGCCCAATCCCCTACAGGAGAGACTGGAACTGAGA
CACAGATCAATGGTGGAACCACACTTGGTCAGGGCTGTTAAGCATGAAGC
TCTCTTGCCTTCTATTTAAAGTCTACCTTCATGTTAACACCTAAAAGATA
GACTTGGGGTTCTTGGAGGATTTTTTAATATCTGTATCGCTCTTCTCAAT
GTGCCCACATTGAATAAATATCCTTTTTCTGGTTTTTCACTATTAATTTA
GCTCCATTTTTAAATCCCGCCCCATTTGTGTGTGGTGGTGTACTCCTTTC
TTCCTCCCTCCTCTCCTCACCTCCCCTTCTTTACCTTACTCTTCTTATTT
CTTTATTCGTCCTCCTCTTTTCTCCTCTCTCTATTCTCTTTCCCTTCTCT
TTCCTCCCCCATTTTCCCCCCGCCTTTCCCCCCTCTTTCCGTTCTTCCCT
CTCGTTCTCCTCACTTCCCTCTCTTTCCTCCCCTCCCTCCTTTTCTATTC
TCCCCCTTCCTCCCTCTCTCTTCTTTTGCTATTCTCTCTTCTTTTTTACT
CTTTCATCTCCCACCTCTCCTCCTGCTTTCTCTCCCCCCTCTCCTCTCGC
TTCGTTCTCTCCATCTCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_p02.g1 MSMg01no398_p02.g1 CHROMAT_FILE:
MSMg01no398_p02.g1 PHD_FILE: MSMg01no398_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:50 2005
         (240 letters)



>mm_chr6_121184800_121185439
          Length = 640

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccacccaagactgccacactagagaaggaaaaggctgaagtctggtgccagccagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cccacccaagactgccacactagagaaggaaaaggctgaagtctggtgccagccagagaa 381

                                                                       
Query: 61  gagagggctttgcagagcccagcaacttgcccaatcccctacaggagagactggaactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagagggctttgcagagcccagcaacttgcccaatcccctacaggagagactggaactga 321

                                                                       
Query: 121 gacacagatcaatggtggaaccacacttggtcagggctgttaagcatgaagctctcttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gacacagatcaatggtggaaccacacttggtcagggctgttaagcatgaagctctcttgc 261

                                                                       
Query: 181 cttctatttaaagtctaccttcatgttaacacctaaaagatagacttggggttcttggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttctatttaaagtctaccttcatgttaacacctaaaagatagacttggggttcttggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)