BAC Information

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BAC

Clone NameMSMg01-399A07
Chromosome6 (Build37)
Map Location 37,665,460 - 37,665,730
singlet/doubletsinglet
Overlap genenone
Upstream genePtn, LOC100039514, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2
Downstream geneLOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399A07.T7 (MSMg01no399_a07.b1)MSMg01-399A07.TJ (MSMg01no399_a07.g1)
ACCAG498985AG498986
length728746
length of high quality
(start - end)
273 (51 - 323)---
definitionCHROMAT_FILE: MSMg01no399_a07.b1 PHD_FILE: MSMg01no399_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:55 2005CHROMAT_FILE: MSMg01no399_a07.g1 PHD_FILE: MSMg01no399_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCC
GCGGAATTCTATTATTTTACACTGCAAATGCTAAAGGAAAACATTATACC
CTATATATTCACATCATTCCCTTTCTTGCTAGGTATAGAAATAATAAGAG
ATGAACTGCAAGAAAACTATCTGAACATCTCCAGACTTAGTAAGAGGTAA
TACCATAGATGAAAACTTGAGGACTGTGCTGGCTGGTCTACAGCAACTTG
ATGCAAGCGAGTCATCATAAAGAAGGGAGTCTCAGCTGAGAAAATGCCTC
CATGATATGGAGCTATGGGCAAGCTAATAGAGCAATTGTCTTTAGTTAGT
GAGCATGGGGTAGGACCCAGCCCATTGCGGATAGTACCGTCCTGGGCTGA
CGGTCCTGGGTTCTATAATAACACCTGTCGACCTTCCCCTTTTTTCCTTG
CCAGCAATCAGCACCTCTCTATGTGCCCTGTTCTATCCCTGTCTTTTGCG
TTTTTGTCCTCCCCGATTCCCTCTCCTGTTTTACGGCGATCTTTTATGCC
CTGCTTTTGTTTCCCCTTTTATTAACTTCCTCTTTCCCCCCCGTTTTCCT
TTGTGCCCCCCTCGTCCTTTTCCCCTCCCTTTTCTTTCCCCTTCCCTCTT
CTCCCCTTTTTTTGTCCTTTTCCCTTTTTCCCCCCCTTTTTTCCATTCCC
CCCCTCCTCTTGCTTCTTCTCTCTTTAT
CTTCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCCCGAAATTCTTTCTGTCCTCTTCTTCTTGGTAAA
CTCCAGGTTCAGAGGATCCAATTCCCTCTTAGAGCCTTAAAGGATACCAG
GGACTCACGCTTTACTCATTATACACCGACATGCCGTACAAACACTCATA
CACAAAGTAAAATTAAACGCCTACTACCCCTGCACAATACAACTTATTAG
TGCTGGAGAGTTGGCCCAGTGTTGAGAATCGCTCGCCGCTCTTGTAGATA
ATCTGGGCTCACACCCACCATTTTTTTCTTTTTATACCCTGACTCTCTCT
TTTGTTACCCATTGTCTTCCTTTTCTCCCCGTGTTACATACACATACCCT
CCTACCTGCATTTTTATATGTTCCTCTCGCCTTTCCCTTCCTTATCTTTT
CTTGCCATCCTAGGCCACGTCAATGAACACCTTCTCCCTTCCCCCCCCTG
ACTCCATACTCGCGTAGCCTCTTGCCCATTGACAAGACCCCCCCCCACAC
CTGCTTACTTCTCCCCCCCTTTCCACACTTTTCACCGCCCCCTCTTTATT
ATTACCTTCCCCCTCTGTTCAATTTTATGTTATCCCTATCGCTACGTTTC
TCCCCCTGCCTCTATTGTCCCGCTTTTTTTTTATTTTTTTTTTTTCCTTG
CACCCGCTCCCACTCTTGTCCCCATTTTTTCTCCCCCTCCACACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_a07.b1 MSMg01no399_a07.b1 CHROMAT_FILE:
MSMg01no399_a07.b1 PHD_FILE: MSMg01no399_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:55 2005
         (273 letters)



>mm_chr6_37665257_37665930
          Length = 674

 Score =  480 bits (248), Expect = e-140
 Identities = 266/272 (97%), Gaps = 3/272 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctattattt-tacac-tgcaaatgctaaaggaaaacattataccctatatattca 61
           |||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctattatttata-acctgcaaatgctaaaggaaaacattataccctatatattca 262

                                                                       
Query: 62  catcattccctttcttgctaggtatagaaataataagagatgaactgcaagaaaactatc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 catcattccctttcttgctaggtatagaaataataagagatgaactgcaagaaaactatc 322

                                                                       
Query: 122 tgaacatctccagacttagtaagaggtaataccatagatgaaaacttgaggactgtgctg 181
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 323 tgaacatctccagacttagtaagaggtaataccatagatggaaacttgagggctgtgctg 382

                                                                       
Query: 182 gctggtctacagcaacttgatgcaagcgagtcatcataaagaagggagtctcagctgaga 241
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 383 gctggtctacagcaacttgatgcaagcgagtcatcagaaagaagggagtctcagctgaga 442

                                           
Query: 242 aaatgcctccatgatatggagctatgggcaag 273
           ||||||||||||||||||||||||||||||||
Sbjct: 443 aaatgcctccatgatatggagctatgggcaag 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 674
Length adjustment: 9
Effective length of query: 264
Effective length of database: 665
Effective search space:   175560
Effective search space used:   175560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)