Query= MSMg01no400_b12.b1 MSMg01no400_b12.b1 CHROMAT_FILE:
MSMg01no400_b12.b1 PHD_FILE: MSMg01no400_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:17 2005
(475 letters)
>mm_chr6_51126094_51126969
Length = 876
Score = 830 bits (429), Expect = 0.0
Identities = 461/475 (97%), Gaps = 9/475 (1%)
Strand = Plus / Minus
Query: 6 gaattcttgatc----ttgcgcaggcctctggctcagcaggaacctgagccaaagtgtga 61
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gaattcttgatccaagt---gcaggcctctggctcagcaggaacctgagccaaagtgtga 620
Query: 62 aactcgcccaggtcttcaggaatgtaaacacatttacatttttgttttgacgtttacatt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aactcgcccaggtcttcaggaatgtaaacacatttacatttttgttttgacgtttacatt 560
Query: 122 tactttaaatgtaaaaagaaaaagtcacattttttttttgttt-gtttggatagaccagg 180
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 559 tactttaaatgtaaaaagaaaaagtcacatttttttttt-tttggtttggatagaccagg 501
Query: 181 atcctcccaaaagagcactggttgttagtgaatcattttaattccaaagaatatttacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atcctcccaaaagagcactggttgttagtgaatcattttaattccaaagaatatttacca 441
Query: 241 gcaattggccatgcagggctgggattgaacaaacaaaccattaaaccaagaaacccgacg 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 440 gcaattggccatgcagggctgggattgaacaaacaaaccaagaaaccaagaaacccgatg 381
Query: 301 gttttctgcaagcctgcacgccgggctcaggggtttctgggtcttggctctccaggcttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gttttctgcaagcctgcacgccgggctcaggggtttctgggtcttggctctccaggcttc 321
Query: 361 ctagcagccttcacacctgatccagggaccgagacagcgttgcattgctgcagctgcatc 420
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttagcagccttcacacctgacccagggaccgagacagcgttgcattgctgcagctgcatc 261
Query: 421 gctggagtatatgcaccacagggctggtggatcattgcagaaaccaaaaccaaag 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gctggagtatatgcaccacagggctggtggatcattgcagaaaccaaaaccaaag 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space: 402690
Effective search space used: 402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_b12.g1 MSMg01no400_b12.g1 CHROMAT_FILE:
MSMg01no400_b12.g1 PHD_FILE: MSMg01no400_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:17 2005
(472 letters)
>mm_chr6_50925790_50926661
Length = 872
Score = 847 bits (438), Expect = 0.0
Identities = 458/472 (97%), Gaps = 12/472 (2%)
Strand = Plus / Plus
Query: 1 attgcatcagacaaagaatatccgtgggaaagaaaatgactcctgactcctaaacaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgcatcagacaaagaatatccgtgggaaagaaaatgactcctgactcctaaacaatgt 260
Query: 61 tttacacacatacaacgtcaagaacacatatggtacttaacgcatacctgttacagaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttacacacatacaacgtcaagaacacatatggtacttaacgcatacctgttacagaatg 320
Query: 121 gcacataagtttacctcttcacgagctgtgagtcattgtcttgcccagaaggttttctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gcacataagtttacctcttcacgagctgtgagtcattgtcttgcccagaaggttttccga 380
Query: 181 gtttcataaatattaaacatgctccctaaatcctaacaggtgctttctacgaatatgaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttcataaatattaaacatgctccctaaatcctaacaggtgctttctacgaatatgaga 440
Query: 241 actatttttctttttcaccccctattcccttcagtctgtgtactgtaactgccaaccatc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actatttttctatttcaccccctattcccttcagtctgtgtactgtaactgccaaccatc 500
Query: 301 atgaaagaaacagagattctgcatagataaacatcctgagaaacccaaaacttggctatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaaagaaacagagattctgcatagataaacatcctgagaaacccaaaacttggctatt 560
Query: 361 tcaaatcctaagacattcattcattcattcattcattcattcattcattcattcattcat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaatcctaagacattcattcattcattcattcattcattcattcattcattca----- 615
Query: 421 tcattcaattattctttcattcatctggaaacaattctggaccataagccag 472
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 -------attattctttcattcatctggaaacaattctggaccataagccag 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
