Query= MSMg01no400_d16.b1 MSMg01no400_d16.b1 CHROMAT_FILE:
MSMg01no400_d16.b1 PHD_FILE: MSMg01no400_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:28 2005
(502 letters)
>mm_chr6_41012015_41012917
Length = 903
Score = 880 bits (455), Expect = 0.0
Identities = 491/503 (97%), Gaps = 1/503 (0%)
Strand = Plus / Plus
Query: 1 aaggggaaaaagaaacatctcttgatgccaagagagatagtgacttcagagaaaaaacca 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 201 aaggggaaaaagaaacatctcttgatgccaagagagatagtgacttcacagacaaaacca 260
Query: 61 ccaatcagggccatgcagagtagagctaattctcatccagggtatcatagctacacaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaatcagggccatgcagagtagagctaattctcatccagggtatcatagctacacaata 320
Query: 121 cccgtctggag-ctgattccgccatgagctgcaggcttctcctctatgtttccctatgtc 179
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccgtctggagcctgattccaccatgagctgcaggcttctcctctatgtttccctatgtc 380
Query: 180 ttgtggaaacaggtgagacttggattccacaggctcctagctccaacttcctttttgctg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtggaaacaggtgagacttggattccacaggctcctagctccaacttcctttttgctg 440
Query: 240 aagctaccaccctttttactgtgctgtgtctgaattttgtccttttcttcttccagcact 299
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 aagctaccacccttttttctgtgccgtgtctgaattttgtccttttcttcttccagcact 500
Query: 300 catgaacactaaaattactcagtcaccaagatatctaatcatgggaagagcaaataagtc 359
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 catgaacactaaaattactcagtcaccaagatatctaatcctgggaagagcaaataagtc 560
Query: 360 tttggaatgtgagcaacatctgggacataatgctatgtactggtataaacagagctctga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 tttggaatgtgagcaacatctgggacataatgctatgtactggtataaacagagcgctga 620
Query: 420 gaagccgccagagttcatgtttctctacagtgttaaacaattgattcgaaatgagacggt 479
||||||||||||| ||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct: 621 gaagccgccagagctcatgtttctctacaatcttaaacagttgattcgaaatgagacggt 680
Query: 480 gcccagtcgttttatacctgaat 502
|||||||||||||||||||||||
Sbjct: 681 gcccagtcgttttatacctgaat 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space: 439356
Effective search space used: 439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_d16.g1 MSMg01no400_d16.g1 CHROMAT_FILE:
MSMg01no400_d16.g1 PHD_FILE: MSMg01no400_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:28 2005
(469 letters)
>mm_chr6_41199942_41200809
Length = 868
Score = 750 bits (388), Expect = 0.0
Identities = 430/452 (95%), Gaps = 15/452 (3%)
Strand = Plus / Minus
Query: 18 aacaagacagtagtgcagagagagctgaggaaggtctttattatacagtctctagggaga 77
||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 868 aacaagacagtagtgcaaagagagttgaggaaggtctttattgtacagtctctagggaga 809
Query: 78 agcttattctcagcaggaaaaattcaagtttctccctttattttctaccttattgttttc 137
|||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||
Sbjct: 808 agcttattctcagcaggaaaaattcaggtttctccatttattttctaccttactgttttc 749
Query: 138 agaaaacaacacacagacacacacagacacacacacacacatacacagacacacacacac 197
|||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 748 agaaaaca----------acacacagacacacacacac----acacagacacacacacac 703
Query: 198 acacacacacacacacacacacacacacacacaccagaataacatggagctcatgccaag 257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 acacacacacacacacacacacacacacacacaccagaataacatggagctcatgccaa- 644
Query: 258 gagaggcaggatgaagctgtttccaggtctaaatatttggggagttaagacaagaaaata 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gagaggcaggatgaagctgtttccaggtctaaatatttggggagttaagacaagaaaata 584
Query: 318 ggaaaaaggaagttttcaagctcaaagtagatccctactctttactggagctgagagatg 377
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 583 ggaaaaaggaagttttcaagctcaaagtagatccctcctctttactggagctgagagatg 524
Query: 378 gttgcagacaaaatcctatagcaggaacctttgtacctctgtatgactcagcaggaagta 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gttgcagacaaaatcctatagcaggaacctttgtacctctgtatgactcagcaggaagta 464
Query: 438 gacattctggcttgtaaatactcttggtaagc 469
||||||||||||||||||||||||||||||||
Sbjct: 463 gacattctggcttgtaaatactcttggtaagc 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 21
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 868
Length adjustment: 10
Effective length of query: 459
Effective length of database: 858
Effective search space: 393822
Effective search space used: 393822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
