Query= MSMg01no400_h04.b1 MSMg01no400_h04.b1 CHROMAT_FILE:
MSMg01no400_h04.b1 PHD_FILE: MSMg01no400_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:45 2005
(474 letters)
>mm_chr6_18791956_18792827
Length = 872
Score = 698 bits (361), Expect = 0.0
Identities = 435/469 (92%), Gaps = 18/469 (3%)
Strand = Plus / Plus
Query: 4 ggaattcttttagttttccaacaggttgatggtgtcattactatcactttctctaattta 63
|||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 204 ggaattctcttagttccccaacaggttgatggtgtcattactgtcactttctctaattta 263
Query: 64 aaccaaggcacagtaagttcaatcattccaaagctgtaattcttcagctaagaaagactt 123
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 aaccaaggcacagaaagttcaatcatcccaaagctgtaattcttcagctaagaaagactt 323
Query: 124 taaaacccacccacaacaaaagaaatactgccttttccattattatgtgtgcagattcct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaaacccacccacaacaaaagaaatactgccttttccattattatgtgtgcagattcct 383
Query: 184 aacatccagttttgagtgaaagtaccactaagtaaataaataaaacattatagagggtgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacatccagttttgagtgaaagtaccactaagtaaataaataaaacattatagagggtgg 443
Query: 244 gtatattaactcattggtacaggactttttaagactttcatagagtgcacaggccctcct 303
| |||| || ||||||||||||||||||| ||||||| ||||||||| |||| ||||||
Sbjct: 444 ggatat-aagtcattggtacaggacttttgaagacttgcatagagtg-acagttcctcct 501
Query: 304 gttacacgcgcgcacacacacacacgcacacacacacacacacacacacacacacacaca 363
||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 502 gttgcacgcgcgcac----------gcacacacacacacacacacacacacacacacaca 551
Query: 364 cacacacacacgagacagagagacagagaatgaataatagaactgtggcaggatctaagt 423
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cacacac------gacagagagacagagaatgaataatagaactgtggcaggatctaagt 605
Query: 424 aaactcgggtccagaagagttgaagtgacttagcaacatcaatgatcag 472
||||||||||||||||||||||| |||||| ||| ||||||||||||||
Sbjct: 606 aaactcgggtccagaagagttgacgtgactgagcgacatcaatgatcag 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 872
Length adjustment: 10
Effective length of query: 464
Effective length of database: 862
Effective search space: 399968
Effective search space used: 399968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_h04.g1 MSMg01no400_h04.g1 CHROMAT_FILE:
MSMg01no400_h04.g1 PHD_FILE: MSMg01no400_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:46 2005
(480 letters)
>mm_chr6_18976857_18977736
Length = 880
Score = 913 bits (472), Expect = 0.0
Identities = 478/480 (99%)
Strand = Plus / Minus
Query: 1 cttccagtccagaagaggagatataaaatgcctaaggcacatcccagaacctcctgaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cttccagtccagaagaggagatataaaatgcctaaggcacatcccagaacctcctgaatg 621
Query: 61 agacagtgtgatggaaatttaatgaagagctccaatgctatctgtgccacgcaattagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agacagtgtgatggaaatttaatgaagagctccaatgctatctgtgccacgcaattagaa 561
Query: 121 ccatgagcagtgcaagtgcagaaaagtctgcatcctcaaatcaagcagggctatgatcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccatgagcagtgcaagtgcagaaaagtctgcatcctcaaatcaagcagggctatgatcat 501
Query: 181 catggagggacagcatggcagagcttgaagcccaagtggtttctttacttgaaaatggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 catggagggacagcatggcagagcttgaagcccaagtggtttctttacttgaaaatggaa 441
Query: 241 acattcacaagggcagagatgataaagagctttttgtgtttggaattgcaaagtaagttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acattcacaagggcagagatgataaagagctttttgtgtttggaattgcaaagtaagttc 381
Query: 301 ataagatccatccctgaccatctggagtgggctactgcagaagatatgactgcctagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ataagatccatccctgaccatctggagtgggctactgcagaagatatgactgcctagaag 321
Query: 361 aatgagctaccatcaacaggttagggctacaaagatctgtgccagggtccatagttcagg 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 320 aatgagctaccatcaacaggttagggctacaaagatctgtgccagggcccatagttcagg 261
Query: 421 taacgtactctctagaacacacatagcttctaaggtagtgttgaacgaaaagctcagagc 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taacgtattctctagaacacacatagcttctaaggtagtgttgaacgaaaagctcagagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
