Query= MSMg01no401_d16.b1 MSMg01no401_d16.b1 CHROMAT_FILE:
MSMg01no401_d16.b1 PHD_FILE: MSMg01no401_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:48 2005
(580 letters)
>mm_chr6_63500875_63501854
Length = 980
Score = 953 bits (493), Expect = 0.0
Identities = 546/581 (93%), Gaps = 29/581 (4%)
Strand = Plus / Minus
Query: 1 aggtttatggctgttccttcttctataaaagggtaaacaggaaaaaaaaccaaaaacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 939 aggtttatggctgttccttcttctataaaagggtaaacaggaaaaaaaaacaaaaacaaa 880
Query: 61 aataaggtagtgagaaagtaatatagaatctgaagagtatgaataattcaatatttccca 120
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 879 aataaggtagtgagaaagtaatatagaagctgatgagtatgaataattcaatatttccca 820
Query: 121 tttattttcatattttcatttttaaagtttccatataaaatgcc-aaaaaatcttctcaa 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 819 tttattttcatattttcatttttaaagtttccatataaaatgccaaaaaaatcttctcaa 760
Query: 180 aaggacatacacacgttggccaaaacacacacacacacacacacacacacacacacacac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aaggacatacacacgttggccaaaacacacacacacacacacacacacacacacacacac 700
Query: 240 acacactctttttcacacacacacacacaattgctaataaaaattaaaccacttactgaa 299
| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 a------------cacacacacacacacaattgctaataaaaattaaaccacttactgaa 652
Query: 300 tcaagtagcttccatgagaaaacactacttttcctttgagactgaatgaaggtggcttgt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tcaagtagcttccatgagaaaacactacttttcctttgagactgaatgaaggtggcttgt 592
Query: 360 tttgcctcattcatttctttctttccagtggcccagagactgggtgggcttgtatatagc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tttgcctcattcatttctttctttccagtggcccagagactgggtgggcttgtatatagc 532
Query: 420 attcagatgaaagagaaaactctcatcttctaagaccaagccatttaccagcgaacgtgg 479
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 531 attcagatgaaagagaaaactctcatcttctaagaccaagccatttaccaacgaacgtgg 472
Query: 480 tgaaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacccttaatgtgatt 539
||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tga----------------aaacaaacaaacaaacaaacaaacaaacccttaatgtgatt 428
Query: 540 tcctcagctcctccagcacaaatgctacaggggcctggcct 580
||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 427 tcctcagctcctccagcacaattgctgcaggggcctggcct 387
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_d16.g1 MSMg01no401_d16.g1 CHROMAT_FILE:
MSMg01no401_d16.g1 PHD_FILE: MSMg01no401_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:48 2005
(344 letters)
>mm_chr6_63328598_63329341
Length = 744
Score = 650 bits (336), Expect = 0.0
Identities = 342/344 (99%)
Strand = Plus / Plus
Query: 1 aatgagaaataccccaatatggatcagagaataatcatcattaatttatgtatcgcattt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 aatgagaaataccccaatatggatcagagaataatcatcattaatttatgtatcgcgttt 260
Query: 61 tcaaagtaccaggctgtaataacttattcgctattaactatgatctgagaatgtcacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaagtaccaggctgtaataacttattcgctattaactatgatctgagaatgtcacagg 320
Query: 121 agtgccttatggaactcaaaactaatttgattgatatgataatgcagttgaggttttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgccttatggaactcaaaactaatttgattgatatgataatgcagttgaggttttttt 380
Query: 181 aaactatgcattcaatagcaaacacaaacaaaaagagaatgaaaggtatttagagtcatg 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactatgcattcaataacaaacacaaacaaaaagagaatgaaaggtatttagagtcatg 440
Query: 241 ccattaagtcagacaaatctctattgaataatgtcagacaaacttgcaatttctccctaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccattaagtcagacaaatctctattgaataatgtcagacaaacttgcaatttctccctaa 500
Query: 301 ctgattatttccactaaatttttcattgatttgaaataaaaaaa 344
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgattatttccactaaatttttcattgatttgaaataaaaaaa 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
