BAC Information

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BAC

Clone NameMSMg01-401H10
Chromosome6 (Build37)
Map Location 94,572,570 - 94,572,812
singlet/doubletsinglet
Overlap geneLrig1
Upstream geneLOC665831, Magi1, LOC100043262, LOC665856, Slc25a26
Downstream geneLOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912, Suclg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401H10.T7 (MSMg01no401_h10.b1)MSMg01-401H10.TJ (MSMg01no401_h10.g1)
ACCAG500843AG500844
length747742
length of high quality
(start - end)
436 (72 - 507)243 (364 - 606)
definitionCHROMAT_FILE: MSMg01no401_h10.b1 PHD_FILE: MSMg01no401_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:06 2005CHROMAT_FILE: MSMg01no401_h10.g1 PHD_FILE: MSMg01no401_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTCATTATTTGCGTCGCTATACGACTCACTCTCCAAAGAGGATCCGCG
GAATTCCCAATTTTCCCCACTAGCCTGGGAACCATGCTGAGGTTTGTGGT
CGGTGCTGATGCCTAAGGCATCCATAGTCCATGCTGCCACGGGAAACCAG
GTGGTGGTCCATGATCTGTGCTGCCGTGGCCTGTTACAGAGAAGGAGGCT
TCTTTTGCAGTGGTCGGATGACTTTGGACTTACAATTGAGTATAAGAGAC
ATTGAAGGCTTCTGTGATACCCCACCTCCCCACTCCCCCAAAAACAGTCC
AGGCAGAAGCTATTGTATTTAGTCCTTAGGAACTATGATAAAGATGCTGA
AGTGTAGCTCTTCACAGTTGATGGCTTCTGGAGGGGGTGAGGTGGGAAAG
GACCCCGTTACTTTTGAGGGGCTGACTGTGCTCCAGTGAGTATATGGGCA
ACACAAATTGGATTTGAAGTATTATTTTTTCTTTTTCGGGTAAGGTTGTA
ATGGTGGGAGGGTATACCTGGTATGAACGGAAATGAGTGTAATCCGAGTC
GCATTGTATGAAAATTCCAAATATTCATAAGGAATATTATGTTGGGTAAC
AAATACTACAGAGCTGACCTTACTAAATAAGCCAGTAGCGTTTTTGTACT
CCATTTATGAACTTGTCCAGAAAGAAATCAGGTACAAATTCCACCTTATG
CACCTGGGACACATCTCCATTTTATTCCTTGCACCTATACTCGCCTT
NACGATGCTTTGNTAGGCTGGGGGCGCCTGTTTCTCACTTTAGGNGAACN
ANAGAAGTTACACAAACTCCAGGNNCNGNTGNGCAGNCTCCATCAAGATA
GGTCCTTCATTTCCTACCCAAGACATGCAGTGGAGGGGTTTGGCGCCTTG
GGATTTGGGTTGTATGACAGGTTTTTACAGTGTATGTAAGCGGTAGTTCT
CAGCTCTGTGGTACTGGTTTCATGGCTTGCATGATAGTTATCTTTTTATG
TGATTGTTGACCTGATGGTCTTCTGACAGCAGGAATCCTGTGGACATGCT
TCAGTCTCTTGNCTCCTTTGAGGNCAGGCCAGTTGTGGCATGAGACACAA
CTGAAGACACCAGAGAATAGGGCACCCACATAGCTGCTCAGTGGTGACAT
TTGTCTTCTTCTTTCTTCCTTAGGATTCTGTCCTTCAACAACCTCACGCG
GCTGGATGAGGAGAGTCTAGCGGAGTTGAGCAGCCTCAGTATCCTGCGCC
TCAGTCACAACGCCATCAGTCACATTGCTGAAGGCGCCTTCAAGGGACTC
AAGAGTCTGCGGGTCTTGTAAGAATTGTGCTTTTGAGGGTGACAGCATGA
AGGGGGTCCCCAGATGGGAGAGCACACAGCANAGCACTTGCTTTGTTGTT
ATTTTCTCTTGCTGGCTTGTAGTCAGAATTGCGCTGTAAGCTGGCCTGCA
TCAGGAACAAGGACTAGAATCACTAATTACTGCTGAACAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_h10.g1 MSMg01no401_h10.g1 CHROMAT_FILE:
MSMg01no401_h10.g1 PHD_FILE: MSMg01no401_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:06 2005
         (243 letters)



>mm_chr6_94572370_94573012
          Length = 643

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatagggcacccacatagctgctcagtggtgacatttgtcttcttctttcttccttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agaatagggcacccacatagctgctcagtggtgacatttgtcttcttctttcttccttag 384

                                                                       
Query: 61  gattctgtccttcaacaacctcacgcggctggatgaggagagtctagcggagttgagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gattctgtccttcaacaacctcacgcggctggatgaggagagtctagcggagttgagcag 324

                                                                       
Query: 121 cctcagtatcctgcgcctcagtcacaacgccatcagtcacattgctgaaggcgccttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cctcagtatcctgcgcctcagtcacaacgccatcagtcacattgctgaaggcgccttcaa 264

                                                                       
Query: 181 gggactcaagagtctgcgggtcttgtaagaattgtgcttttgagggtgacagcatgaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gggactcaagagtctgcgggtcttgtaagaattgtgcttttgagggtgacagcatgaagg 204

              
Query: 241 ggg 243
           |||
Sbjct: 203 ggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)