MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-401J17
Chromosome	6 (Build37)
Map Location	91,948,925 - 91,949,097
singlet/doublet	singlet
Overlap gene	Fgd5
Upstream gene	Nup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3, Slc6a6, Grip2, C130022K22Rik, 4930590J08Rik
Downstream gene	Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866, A730049H05Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Nup210 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54563 MGI:1859555
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hdac11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232232 MGI:2385252
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fbln2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14115 MGI:95488
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC665716 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665716
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 ESTs, 3 Proteins pseudo : _no_value

name	Wnt7a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22421 MGI:98961
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043659 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043659
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 68 mRNAs, 2548 ESTs, 23 Proteins pseudo : _no_value

name	LOC625420 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:625420
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	Chchd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72170 MGI:1919420
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem43 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74122 MGI:1921372
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Xpc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22591 MGI:103557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lsm3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67678 MGI:1914928
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc6a6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21366 MGI:98488
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Grip2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:243547 MGI:2681173
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 22 ESTs, 3 Proteins

name	C130022K22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232236 MGI:2444652
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930590J08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381798 MGI:2685917
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fgd5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232237 MGI:2443369
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nr2c2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22026 MGI:1352466
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrps25 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64658 MGI:1928140
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfyve20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78287 MGI:1925537
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22044 MGI:98823
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665805 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665805
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Prickle2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:243548 MGI:1925144
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545866 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545866
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 34 ESTs, 7 Proteins pseudo : _no_value

name	A730049H05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74516 MGI:1921766
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nup210 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9055313 GeneID:54563 MGI:1859555
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleoporin 210 transcript_id : NM_018815.1

name	Hdac11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130074 GeneID:232232 MGI:2385252
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histone deacetylase 11 transcript_id : NM_144919.2

name	Fbln2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124517703 GeneID:14115 MGI:95488
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibulin 2 transcript_id : NM_007992.2

name	Fbln2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124517692 GeneID:14115 MGI:95488
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibulin 2 transcript_id : NM_001081437.1

name	Wnt7a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227223 GeneID:22421 MGI:98961
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : wingless-related MMTV integration site 7A transcript_id : NM_009527.3

name	LOC625420 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149255247 GeneID:625420
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : hypothetical LOC625420 transcript_id : XM_001479774.1

name	Chchd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129894 GeneID:72170 MGI:1919420
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil-helix-coiled-coil-helix domain containing 4 transcript_id : NM_133928.2

name	Tmem43 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801819 GeneID:74122 MGI:1921372
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 43 transcript_id : NM_028766.2

name	Xpc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121247428 GeneID:22591 MGI:103557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : xeroderma pigmentosum, complementation group C transcript_id : NM_009531.2

name	Lsm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802858 GeneID:67678 MGI:1914928
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) transcript_id : NM_026309.2

name	Slc6a6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328477 GeneID:21366 MGI:98488
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 6 (neurotransmitter transporter, taurine), member 6 transcript_id : NM_009320.3

name	Grip2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149255249 GeneID:243547 MGI:2681173
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 22 ESTs, 3 Proteins product : glutamate receptor interacting protein 2 transcript_id : XM_979116.2

name	C130022K22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27370063 GeneID:232236 MGI:2444652
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C130022K22 gene transcript_id : NM_172730.1

name	4930590J08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38348569 GeneID:381798 MGI:2685917
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930590J08 gene transcript_id : NM_198668.1

name	Fgd5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56699429 GeneID:232237 MGI:2443369
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FYVE, RhoGEF and PH domain containing 5 transcript_id : NM_172731.2

name	Nr2c2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892901 GeneID:22026 MGI:1352466
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 2, group C, member 2 transcript_id : NM_011630.2

name	Mrps25 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130303 GeneID:64658 MGI:1928140
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein S25 transcript_id : NM_025578.4

name	Zfyve20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31541995 GeneID:78287 MGI:1925537
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, FYVE domain containing 20 transcript_id : NM_030081.2

name	Trh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134031936 GeneID:22044 MGI:98823
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thyrotropin releasing hormone transcript_id : NM_009426.2

name	Prickle2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487246 GeneID:243548 MGI:1925144
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : prickle-like 2 (Drosophila) transcript_id : NM_001081146.1

name	Nup210 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055314 GeneID:54563 MGI:1859555
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005635 - nuclear envelope [Evidence IDA]; GO:0005643 - nuclear pore [Evidence ISS] [Evidence IEA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0015288 - porin activity [Evidence IEA] GO_process : GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : nuclear pore membrane glycoprotein 210; nuclear pore membrane protein 210 product : nucleoporin 210 protein_id : NP_061285.1

name	Hdac11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450317 CCDS:CCDS20366.1 GeneID:232232 MGI:2385252
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0000118 - histone deacetylase complex [Evidence TAS]; GO:0005634 - nucleus [Evidence TAS] [Evidence IEA] GO_function : GO:0004407 - histone deacetylase activity [Evidence TAS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence TAS] GO_process : GO:0016568 - chromatin modification [Evidence IEA] [Evidence TAS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : histone deacetylase 11 protein_id : NP_659168.1

name	Fbln2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124517704 GeneID:14115 MGI:95488
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : fibulin 2 isoform a protein_id : NP_032018.2

name	Fbln2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124517693 GeneID:14115 MGI:95488
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : fibulin 2 isoform b protein_id : NP_001074906.1

name	Wnt7a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543960 GeneID:22421 MGI:98961
definition	GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0005102 - receptor binding [Evidence TAS]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007267 - cell-cell signaling [Evidence TAS]; GO:0007275 - development [Evidence IEA]; GO:0035115 - embryonic forelimb morphogenesis [Evidence IGI]; GO:0035116 - embryonic hindlimb morphogenesis [Evidence IGI]; GO:0030326 - embryonic limb morphogenesis [Evidence IGI]; GO:0007223 - frizzled-2 signaling pathway [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence TAS]; GO:0007165 - signal transduction [Evidence TAS]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 note : postaxial hemimelia product : wingless-related MMTV integration site 7A protein_id : NP_033553.2

name	LOC625420 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149255248 GeneID:625420
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479824.1

name	Chchd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527144 CCDS:CCDS20367.1 GeneID:72170 MGI:1919420
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006605 - protein targeting [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : coiled-coil-helix-coiled-coil-helix domain containing 4 protein_id : NP_598689.1

name	Tmem43 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21311891 CCDS:CCDS20368.1 GeneID:74122 MGI:1921372
definition	codon_start : 1 product : transmembrane protein 43 protein_id : NP_083042.1

name	Xpc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121247429 GeneID:22591 MGI:103557
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence IDA] GO_function : GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IMP]; GO:0031573 - intra-S DNA damage checkpoint [Evidence IGI]; GO:0006289 - nucleotide-excision repair [Evidence IEA] [Evidence IMP] [Evidence IDA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : xeroderma pigmentosum, complementation group C protein_id : NP_033557.2

name	Lsm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385806 CCDS:CCDS20369.1 GeneID:67678 MGI:1914928
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence ISS] GO_function : GO:0003723 - RNA binding [Evidence IEA]; GO:0030629 - U6 snRNA 3'-end binding [Evidence ISS] GO_process : GO:0016071 - mRNA metabolism [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0006374 - nuclear mRNA splicing via U2-type spliceosome [Evidence ISS]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA] codon_start : 1 product : LSM3 homolog, U6 small nuclear RNA associated protein_id : NP_080585.1

name	Slc6a6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982828 GeneID:21366 MGI:98488
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IC]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0001761 - beta-alanine transporter activity [Evidence IDA]; GO:0005328 - neurotransmitter:sodium symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA]; GO:0005368 - taurine transporter activity [Evidence IDA] GO_process : GO:0001762 - beta-alanine transport [Evidence IDA]; GO:0006836 - neurotransmitter transport [Evidence IEA]; GO:0015734 - taurine transport [Evidence IMP] [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : taurine/beta-alanine transporter product : solute carrier family 6 (neurotransmitter transporter, taurine), member 6 protein_id : NP_033346.2

name	Grip2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149255250 GeneID:243547 MGI:2681173
definition	codon_start : 1 product : glutamate receptor interacting protein 2 protein_id : XP_984210.2

name	C130022K22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370064 CCDS:CCDS20370.1 GeneID:232236 MGI:2444652
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC232236 protein_id : NP_766318.1

name	4930590J08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348570 GeneID:381798 MGI:2685917
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC381798 protein_id : NP_941070.1

name	Fgd5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56699430 CCDS:CCDS20371.1 GeneID:232237 MGI:2443369
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA] GO_process : GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 product : FYVE, RhoGEF and PH domain containing 5 protein_id : NP_766319.2

name	Nr2c2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67906168 CCDS:CCDS20372.1 GeneID:22026 MGI:1352466
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0051301 - cell division [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0048137 - spermatocyte division [Evidence IMP]; GO:0007283 - spermatogenesis [Evidence IMP] [Evidence TAS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : orphan receptor, TR4; nuclear receptor subfamily 2, group H, member 2 product : nuclear receptor subfamily 2, group C, member 2 protein_id : NP_035760.1

name	Mrps25 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981257 CCDS:CCDS20373.1 GeneID:64658 MGI:1928140
definition	GO_component : GO:0005763 - mitochondrial small ribosomal subunit [Evidence ISS]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence ISS] codon_start : 1 product : mitochondrial ribosomal protein S25 protein_id : NP_079854.2

name	Zfyve20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541996 CCDS:CCDS20374.1 GeneID:78287 MGI:1925537
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA] GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : zinc finger, FYVE domain containing 20 protein_id : NP_084357.2

name	Trh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134031937 CCDS:CCDS20375.1 GeneID:22044 MGI:98823
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005184 - neuropeptide hormone activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008437 - thyrotropin-releasing hormone activity [Evidence ISS] GO_process : GO:0009755 - hormone-mediated signaling [Evidence IEA] codon_start : 1 product : thyrotropin releasing hormone protein_id : NP_033452.2

name	Prickle2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487247 GeneID:243548 MGI:1925144
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : prickle-like 2 protein_id : NP_001074615.1

name	LOC665805 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665805
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:179419
definition	standard_name : AI836801

name	(CDS detail)
type	STS
link
xref	UniSTS:224278
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:235496
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:159544
definition	standard_name : X75285

name	(CDS detail)
type	STS
link
xref	UniSTS:165478
definition	standard_name : AI849442

name	(CDS detail)
type	STS
link
xref	UniSTS:207996
definition	standard_name : BB445750

name	(CDS detail)
type	STS
link
xref	UniSTS:246359
definition	standard_name : BE106651

name	(CDS detail)
type	STS
link
xref	UniSTS:144783
definition	standard_name : Wnt7a

name	(CDS detail)
type	STS
link
xref	UniSTS:235498
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:235499
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:235500
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:132118
definition	standard_name : DXMit227

name	(CDS detail)
type	STS
link
xref	UniSTS:245086
definition	standard_name : AW531182

name	(CDS detail)
type	STS
link
xref	UniSTS:161845
definition	standard_name : RH125023

name	(CDS detail)
type	STS
link
xref	UniSTS:159542
definition	standard_name : AA589629

name	(CDS detail)
type	STS
link
xref	UniSTS:159543
definition	standard_name : C80501

name	(CDS detail)
type	STS
link
xref	UniSTS:219086
definition	standard_name : RH136997

name	(CDS detail)
type	STS
link
xref	UniSTS:161265
definition	standard_name : RH124443

name	(CDS detail)
type	STS
link
xref	UniSTS:125268
definition	standard_name : MHAa67c6.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:225068
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:130644
definition	standard_name : D6Mit100

name	(CDS detail)
type	STS
link
xref	UniSTS:124199
definition	standard_name : 36.MMHAP88FLD6.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:280875
definition	standard_name : NR2C2_2354

name	(CDS detail)
type	STS
link
xref	UniSTS:144665
definition	standard_name : Nr2c2

name	(CDS detail)
type	STS
link
xref	UniSTS:218949
definition	standard_name : RH136860

name	(CDS detail)
type	STS
link
xref	UniSTS:130916
definition	standard_name : D6Mit362.1

name	(CDS detail)
type	STS
link
xref	UniSTS:130915
definition	standard_name : MTH3026

name	(CDS detail)
type	STS
link
xref	UniSTS:235502
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:165479
definition	standard_name : AI324969

name	(CDS detail)
type	STS
link
xref	UniSTS:125812
definition	standard_name : X59387

name	(CDS detail)
type	STS
link
xref	UniSTS:273081
definition	standard_name : PMC317216P3

name	(CDS detail)
type	STS
link
xref	UniSTS:162133
definition	standard_name : RH125311

name	(CDS detail)
type	STS
link
xref	UniSTS:272525
definition	standard_name : PMC304098P6

name	(CDS detail)
type	STS
link
xref	UniSTS:226218
definition	standard_name : AI385205

name	(CDS detail)
type	STS
link
xref	UniSTS:65406
definition	standard_name : STS-R99346

name	(CDS detail)
type	STS
link
xref	UniSTS:130831
definition	standard_name : D6Mit284

name	(CDS detail)
type	STS
link
xref	UniSTS:130861
definition	standard_name : D6Mit31.2

name	(CDS detail)
type	STS
link
xref	UniSTS:116326
definition	standard_name : D6Mit31

name	(CDS detail)
type	STS
link
xref	UniSTS:207999
definition	standard_name : BE199318

name	(CDS detail)
type	STS
link
xref	UniSTS:208000
definition	standard_name : AW743315

name	LOC665716 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149255377 GeneID:665716
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 ESTs, 3 Proteins product : similar to ribosomal protein L23a pseudo : _no_value transcript_id : XR_034701.1

name	LOC100043659 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149255378 GeneID:100043659
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 68 mRNAs, 2548 ESTs, 23 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudo : _no_value transcript_id : XR_034702.1

name	LOC545866 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149255380 GeneID:545866
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 34 ESTs, 7 Proteins product : similar to 45kDa splicing factor; SPF 45 pseudo : _no_value transcript_id : XR_034732.1

name	A730049H05Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149255103 GeneID:74516 MGI:1921766
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A730049H05 gene transcript_id : XR_035139.1

clone name	MSMg01-474D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118G05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-125F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-186D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479H11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-376K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498M17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-420B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079A10
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-401J17.T7 (MSMg01no401_j17.b1)	MSMg01-401J17.TJ (MSMg01no401_j17.g1)
ACC	AG500951	AG500952
length	746	1,671
length of high quality (start - end)	173 (78 - 250)	---
definition	CHROMAT_FILE: MSMg01no401_j17.b1 PHD_FILE: MSMg01no401_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:16 2005	CHROMAT_FILE: MSMg01no401_j17.g1 PHD_FILE: MSMg01no401_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:16 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAAGACAGCGCG GAATTCATGACTCTTTCCAAAAACATAGAGCATCTATAGTGCTAGGGTAC AACATGAGCTCCACAAGGTTCCCGCACAGCAGACACCCTTGGAAAGCACA GGCAGGCCAAGCTGCTGCTGGAAGCCCAAGAATGCGCTTGGCATGTGTCG TCTACACCTACTCTGGCAGCCCAGAGACGAAGCTAGGACAGGTGGGGCAA GTTTTATGCAGGGTCAGAGCTGATGTGAGCGCATTCTCTTCCCTTGTCTT GCTGCCTACCACTATTGTTTCATGGGTTACAAACTCCATCAGCCACCCGA TGTCCCTGAGTTCCCTACACTGAAGAGTTCAGACTCGGCAGAGCTCCCGG TCACTCTTTTCTAAGCCATAACTGCATCTGTGGTGGAGAGCCATCAAACC ACAGAGGATACAGCAGCTGGCCTTGCTGCCCCGCCTCAATGTCTAGCCGT TTGGTCACTTGTCTTTGGAGTCTCCTTTTTCTCTGTGCACAAGGATGATG CTGGCTCTCCCTTGCTCCAAACCTTGTACAGCTCCCTCCTGCTCATAGCA CACGGCTCCCTTGTAGACGGCATGAGTCCCAGCTCACCAACATCTCCTTT CCCAGGCTTCCTCCATTTTTTTCAATGCCCTCTCCCATTTATCCTCTGAC ATACTGTTTGACTCATTCCTGTCTTCTACTACGGCCCTTTTCACTN	TCTTTATTCTCCATCATCTNCCTCTATCTCTATTAAANNNGGAGANGCGG GAGCANCAACGATGATCTTCTCACAACAAGACAGANGAGANGCNAGAGGA AGACACGAAAAAGACTGTAGTCTGTTTCCCCCCGCAGGAAGAGAATNCAC GANGTGGCACCAGCGACTATAGATCATACACTTCTANTGCGTCTGCATAG TAACGTGATAGATGTATCTGATCGCTCGTATGGCACGATTCATCACAACA CTCTAGCTACACNCACTCACTATACATAACTCAGCACGCATATACCATAT GCGTGCTCTATTCCAATCAACGCGTAATAGTGTGCCATCATAATAAAAGG ACACGCGCACGCGATGCCAGTCAACATTCTGATATGATCGCCCTCCGACA GTGACCACGACTCACCCCATATATATATATTATATGCTATGACGTCGCAC CCCTATAACAAAGTGTTGCTCAGCACCATTCTCCTCTGTGAATATCTCAT ATTCAGTATATCCGATCAGATACGCCCACGCCCTACTCCTCACTATAATT TAACTGCGACGCGCCTCTTATCGACGGNTGCGCTCATATACTAGGCATNG CTCTATAGGCCACNGCGCCATAATATAGTGCCGCGCTTCACTCCACGCAG TGCCACACGCGACAACATATTCACTCAGTCATGCTCAGCGCGTACAACAT AGCGTCCATATATTCTCTCTGGGTACATGGCACGCAATATAACGCCGCAC TCTACTCTCCATCGGTNCGACTGTAACTTAACTGCATAGCGAAAGGTGCA CCTATCACACGTATATTGCGCGGATTATGGACACGTCCCACGTGAGCGCT ACCGCCACTGTGCGGTCTTGCTACTCTATTTATATGTTCGCGCATCGCTA TATATCCTTGTCCACCGATTGTNCCCAGCGATGCATGCGATCCATCCTAT CATTATCATCTGCTCCCTCCCTCGCTACATCCCCCATCATAGATCTCTGC TCACACCCGCGTATTCGTCACATATATCTCTCCTCGCTTATTAGATTTCT GCACACGCAGCCAGCTTCTCGCCTCGCCACTCAACTTATATCTGATATTT ATGCCCTCTTCTGATATAGACTCCTACCATCACAATCATCTCTCCTCGAC TATTATCGCGACTCGACACTTCTTATGTCTCATNGTGGTCCTGCCCANAT GTCTACTCACTACACATCACTATTATCCCTTACACCCTCCCTATGATATA CCACCTCCTGCTTATTTACCGCTGTCAGCTGCTACGACCACCCATCTACA AATCGTCGCGCACCTCTATAATCTCACCCAACTAATAAAGCCTCGCGCCG CCATATTGCGCGCTCTATTCGCACCGACCGGTACACATCCCATACGCCGC TCACCNGTCGCGTCATAATTGTGCCTGCTCTAAATCACCGCCGTCTATAT AATATTATNATTCTCTCGACCNCAACGCTCTCATCGATGTCTCTCCTCTA TATCAGCATACCATATATATCTCCTGCACGCTAATTACATAACAGCCANC TCTGACTAATCTATATCAATCAGTTTCACTCATCTCACACACTCATACAT ACGCACCCTCATATATAGTGATTGCCGCCTATCCCATTATTATGCGCGCA CGACAGCCGACTCTCGCATCN
quality values	Open. Hide. 8 8 8 6 8 8 9 8 8 9 9 19 27 34 25 19 15 10 15 9 10 11 11 10 8 6 7 7 6 8 17 19 8 9 8 10 7 6 6 6 6 6 6 7 6 6 11 9 19 23 30 26 24 28 32 33 30 28 28 18 7 6 6 6 7 6 9 9 9 10 12 10 13 10 17 17 12 15 23 25 44 44 53 53 57 57 57 57 57 43 43 40 40 43 44 43 50 37 37 34 42 42 42 42 42 38 57 50 48 33 33 33 33 33 25 22 12 13 14 18 25 18 8 8 8 10 13 22 32 40 46 37 37 37 39 47 38 57 57 57 57 57 57 57 57 57 57 57 48 48 48 48 48 54 48 59 54 54 54 54 47 59 43 43 43 46 48 46 59 59 54 48 48 43 48 48 57 57 54 50 47 50 50 50 48 57 57 59 57 57 57 57 57 59 59 57 68 68 68 68 68 68 68 68 57 57 57 57 59 68 68 68 68 68 68 68 59 59 47 43 43 43 43 43 48 48 48 48 48 57 59 59 59 59 59 48 48 48 57 57 48 48 43 47 43 46 37 30 22 22 12 11 8 6 6 6 6 8 17 17 21 34 36 40 48 48 48 48 57 59 57 57 57 57 57 57 57 57 57 59 59 57 57 59 59 59 68 68 68 59 59 59 59 59 57 48 48 48 57 57 59 57 57 57 57 57 53 53 50 50 50 50 42 41 22 19 14 9 9 7 7 7 7 7 7 9 9 12 11 15 22 32 47 59 59 59 48 48 47 47 40 39 39 39 39 43 57 59 59 57 57 48 48 48 59 57 57 57 57 34 34 28 28 33 32 25 25 13 13 13 18 16 20 12 15 18 41 41 44 57 43 43 47 59 57 46 43 43 42 42 35 35 42 44 43 47 47 32 26 13 12 11 26 32 48 48 48 48 59 59 59 32 32 17 22 22 36 36 43 44 43 43 42 39 35 37 37 42 42 32 32 37 34 43 43 43 43 43 37 39 35 36 37 34 28 28 14 14 23 26 25 32 28 32 32 23 23 28 32 32 28 30 37 32 35 31 35 37 36 32 24 31 33 34 36 32 32 59 35 29 30 22 20 20 32 30 43 43 34 34 28 28 31 22 15 9 9 8 6 8 13 28 28 21 18 12 24 21 28 28 24 24 28 28 28 37 26 26 13 13 12 16 21 30 32 36 48 48 34 34 23 23 18 26 17 17 11 11 11 16 16 19 18 19 25 30 28 18 18 18 17 15 10 10 10 10 15 19 28 34 25 25 25 28 25 18 17 13 14 22 25 25 23 20 13 8 8 8 8 9 12 10 10 12 12 21 22 37 26 20 10 10 10 10 11 15 12 12 10 9 11 11 9 9 11 8 8 8 11 9 8 9 13 9 9 9 10 12 11 9 9 9 10 10 9 10 11 11 17 11 10 10 10 10 10 10 11 17 17 19 17 16 16 14 14 15 19 19 16 16 14 9 8 10 10 10 8 8 8 8 8 8 10 8 8 8 10 8 9 9 8 8 8 12 12 10 11 10 11 16 21 24 11 10 15 10 10 8 8 10 10 10 8 19 15 17 17 16 15 15 13 10 8 8 8 8 9 15 10 11 10 10 8 8 8 8 8 8 8 8 8 8 8 8 13 6 6 6 8 8 6 6 6 6 8 9 12 16 21 12 12 7 6 8 3 0	Open. Hide. 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 10 10 3 0 3 8 8 10 8 8 8 8 10 12 11 11 8 8 6 7 3 0 0 0 3 7 7 7 3 0 3 6 6 8 8 8 8 7 3 0 3 6 6 6 6 6 6 6 6 6 6 6 6 8 10 6 6 6 6 6 6 6 6 6 8 8 11 11 3 0 3 6 6 3 0 3 3 0 3 6 6 6 6 6 8 8 8 8 8 8 7 9 8 8 6 6 6 6 8 8 8 8 9 9 6 6 6 7 6 7 8 8 8 10 9 7 7 6 6 6 10 10 10 10 10 10 10 10 10 3 0 3 6 6 6 3 0 3 8 8 8 8 8 10 10 10 6 6 6 6 8 8 6 6 6 9 9 15 15 8 8 6 6 8 6 14 14 9 9 3 0 3 9 9 9 9 9 7 7 7 6 6 6 6 6 13 8 9 9 9 9 9 9 9 9 7 6 8 6 6 8 8 8 8 6 6 6 6 6 8 8 6 6 6 6 6 6 7 9 7 7 8 8 6 6 6 8 8 10 8 9 8 8 8 8 8 8 8 8 10 11 10 7 6 6 3 0 3 8 8 8 8 8 8 9 13 13 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 11 11 11 8 8 8 8 8 8 6 6 6 6 6 6 6 6 6 8 8 8 8 8 10 8 8 6 6 6 7 6 6 8 6 7 6 6 6 8 10 8 10 8 10 9 8 8 8 8 8 8 6 6 6 7 7 7 8 8 8 8 9 9 10 9 9 9 9 8 10 9 9 9 9 10 10 6 6 6 6 8 6 8 8 6 6 6 6 6 6 6 6 6 6 6 6 6 8 8 8 8 8 10 8 8 8 8 8 8 8 9 9 9 9 6 6 6 6 6 6 8 6 8 8 8 8 9 17 15 17 17 13 10 8 8 8 8 8 6 6 6 6 6 10 11 6 6 6 6 10 6 8 8 8 8 8 8 8 8 8 8 8 8 8 11 11 11 11 11 11 11 10 8 8 8 6 8 6 6 6 8 6 9 7 6 6 6 6 6 6 7 8 10 8 9 10 11 6 6 6 6 6 6 8 8 8 8 11 12 10 10 8 8 8 8 6 6 6 7 10 10 8 8 8 6 6 6 6 6 6 6 8 8 8 9 8 10 6 6 6 6 6 10 8 8 8 8 10 10 8 8 8 11 8 6 6 6 8 7 6 6 6 6 8 6 6 6 6 6 6 6 7 6 6 6 8 11 12 8 8 6 6 6 8 8 8 8 3 0 3 6 6 6 6 6 6 6 6 11 10 10 8 8 10 8 8 8 8 3 0 3 6 6 8 8 11 8 6 6 7 7 9 9 3 0 3 6 6 6 6 8 9 8 8 8 6 6 7 6 6 6 8 7 7 6 6 6 6 6 6 13 12 13 9 9 9 9 6 6 6 6 6 6 6 6 7 8 8 8 8 6 6 6 6 8 8 6 6 6 6 6 8 8 10 10 10 13 9 9 6 8 6 6 6 6 12 12 8 6 6 6 7 6 6 6 6 8 6 8 6 6 6 6 8 8 10 10 11 11 11 11 10 7 7 6 6 6 6 9 9 9 6 6 6 6 6 6 6 6 6 6 6 9 6 6 6 6 6 6 11 11 8 8 8 8 8 8 8 8 6 6 8 8 9 12 16 12 9 7 6 8 6 6 6 6 6 3 0 3 6 8 8 8 8 8 8 8 8 8 7 6 6 6 8 8 8 7 10 9 6 6 6 6 8 6 6 6 6 8 8 10 11 9 8 8 8 8 8 8 8 6 6 6 6 6 6 6 6 9 10 8 6 6 7 6 8 6 6 6 6 8 8 12 8 7 7 7 7 8 6 6 6 6 6 6 7 9 10 10 10 10 6 6 6 6 6 6 8 6 6 6 6 6 6 6 6 6 6 6 6 8 8 6 6 6 6 6 6 8 8 10 8 10 7 9 9 7 7 6 6 8 6 6 6 6 6 6 8 8 8 8 8 6 8 7 7 10 10 8 8 8 8 12 17 17 13 6 6 6 6 6 6 3 0 3 8 6 6 6 6 8 8 9 9 8 8 8 8 8 8 10 13 11 6 6 6 6 6 6 6 6 6 6 6 6 6 8 8 9 9 6 8 6 6 6 6 8 6 7 7 8 16 12 11 8 8 8 8 8 8 8 8 9 13 12 10 10 10 8 8 8 8 8 9 11 8 8 6 6 6 6 10 10 8 8 8 8 10 6 6 6 8 8 8 8 8 10 8 8 8 8 8 8 6 6 6 6 6 11 11 8 8 8 8 13 8 8 8 10 11 9 7 10 6 6 6 6 10 6 8 9 8 10 10 11 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 7 7 9 12 14 13 8 8 8 7 8 6 6 6 7 6 7 12 10 8 8 11 7 9 9 9 9 6 7 7 7 6 6 8 8 10 7 6 6 6 6 6 8 8 11 13 8 8 8 8 8 8 8 8 8 6 6 7 7 8 8 6 6 8 8 8 8 6 6 8 8 8 6 6 8 8 6 6 6 6 8 6 6 8 6 7 7 7 6 8 10 11 11 15 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 8 8 3 0 3 8 8 10 10 10 8 8 6 6 8 8 3 0 3 8 6 6 6 6 6 6 7 6 8 6 7 6 6 6 6 8 8 8 8 8 8 8 6 6 6 6 6 6 8 8 6 6 6 6 6 10 8 9 9 9 7 7 6 6 6 6 12 11 14 8 10 6 7 6 6 9 8 8 8 8 8 8 8 8 8 8 11 8 8 6 6 6 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 7 7 7 6 6 6 6 6 6 6 8 6 6 6 6 6 7 7 8 8 6 8 8 8 8 8 8 8 8 8 7 6 10 6 10 6 10 7 7 10 6 6 6 6 6 6 7 10 8 8 8 6 6 6 6 6 10 8 8 8 8 8 8 9 9 7 6 6 8 8 8 6 6 6 6 8 10 10 12 7 9 6 6 6 6 6 6 8 7 7 10 6 6 6 6 9 10 11 15 10 6 6 6 6 6 6 6 6 6 3 0 3 8 10 10 10 10 8 8 9 9 9 10 17 11 8 8 8 8 8 8 10 10 10 10 11 10 10 10 8 8 10 10 6 6 6 6 8 8 8 11 13 10 13 8 6 6 6 6 8 8 8 3 0 3 7 6 6 7 7 13 10 9 8 8 3 0 3 6 6 6 6 6 10 9 10 8 10 8 8 8 8 8 8 8 12 10 11 9 9 9 16 11 13 10 10 10 10 10 11 8 8 6 6 6 11 8 8 8 8 8 8 9 12 10 10 6 6 6 6 6 6 7 7 8 8 8 8 8 8 8 8 8 10 8 8 8 6 8 8 8 8 3 0 3 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 9 9 10 10 10 10 13 10 10 10 9 7 6 8 6 7 6 9 7 8 8 8 10 13 10 10 8 6 6 6 6 6 6 12 13 8 6 6 8 10 8 8 8 7 9 9 11 10 8 6 6 6 6 6 8 8 8 8 6 6 6 6 10 6 6 6 6 6 6 8 8 8 8 8 9 10 10 8 6 6 6 6 6 6 10 9 9 9 9 9 9 10 12 6 8 6 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no401_j17.b1 MSMg01no401_j17.b1 CHROMAT_FILE:
MSMg01no401_j17.b1 PHD_FILE: MSMg01no401_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:16 2005
         (173 letters)



>mm_chr6_91948725_91949297
          Length = 573

 Score =  311 bits (161), Expect = 1e-89
 Identities = 170/173 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagcatctatagtgctagggtacaacatgagctccacaaggttcccgcacagcagacacc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 373 gagcatctatagtgctagggtacaacatgagctccacaaggctcccgtacagcagacacc 314

                                                                       
Query: 61  cttggaaagcacaggcaggccaagctgctgctggaagcccaagaatgcgcttggcatgtg 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cttggaaagcacaggcaggccgagctgctgctggaagcccaagaatgcgcttggcatgtg 254

                                                                
Query: 121 tcgtctacacctactctggcagcccagagacgaagctaggacaggtggggcaa 173
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcgtctacacctactctggcagcccagagacgaagctaggacaggtggggcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information