BAC Information

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BAC

Clone NameMSMg01-401K20
Chromosome6 (Build37)
Map Location 99,965,667 - 99,966,134
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxp1, Eif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703
Downstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401K20.T7 (MSMg01no401_k20.b1)MSMg01-401K20.TJ (MSMg01no401_k20.g1)
ACCAG501004AG501005
length762768
length of high quality
(start - end)
229 (326 - 554)468 (75 - 542)
definitionCHROMAT_FILE: MSMg01no401_k20.b1 PHD_FILE: MSMg01no401_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:21 2005CHROMAT_FILE: MSMg01no401_k20.g1 PHD_FILE: MSMg01no401_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAAATCCGCGGAAT
TCACGGGATTCCCATGAACAAAATGAACCCGAAGCTTGCCACAGAGGACC
TTTGGAAGTTGGGGGGCAATTAACCTTTCCGTGTAACATGAGCTTCCTCA
GCTAAATGGAGGGGAAAACGAGAGCAGGTTTAATAGTGAACAGATTCATG
GTCGCCTCAGTTCCCACGTGCTGTACGGAGCTATGTTTACCACTTGTGGT
CTGGCATGAGAGGACCACATAACATACCCTACTGGGTCTCATACTACATA
GCCCAAGCTGACTCGGTTATTAGTTGTATTCTCAGCTAGCCTAACACTAG
ATAGCCTCTGCTGTCTGTGAACTACTCTCTGTAGTTCAGGCTGCCTTCCA
ACTCACTGTGGAACCCAGGTTTTGCTCCAACTCACTCAGTGGCCTCTGCT
ATCCTCAAACCAGTGCGACGCTCTTGCCACAGCCTTCCTCGTGCTGTTGT
TACAGGCATGAAACGGTGTATCTAGCCCCATCTCTGCTTTCTCCTCTTGA
CACAAGGCTAGGTCCTGGCCTGCTCTGTGGCTATGGAGACAGCTCGTCCC
TTTTCCCAGCATGTGCTTCCCCTATAGGTCCTAGTATTGGCTCGGACCAC
GTTTTTTTTTTTACTTCCCTGCTCTCTAATCCCTAATTGACTTCTTCCTT
TGATCTCGTCGACCCCCGTTCCCTCTACAAATTCAATTTTTTGGGGCACA
TAGCTTTTTTTT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCAGAAAAATCATGAAGCCATTTCTCAAGGTGCATGC
TGACTTGCAGCCCCTGGCTGCGGCCCATTCTGCCATCCTGGGGCTTGGCG
GTCATTCTTGTTTTTTGGTTGTCTGCTTTTGTTACTTGTGTGGCTACTTT
TGTCTTGGCCTGGATACCACATAGCACAAGGCCATCTCCTGGCCAAACCC
CCAGGAATGAAAAGGTGTGTGTACTGCTCTAAGCTCTGAGAACGCTTCAA
CATAGGACCCATTAGCCTTACTTTTTATCAAAGTAGGTAAGCCTTAGACA
CTAGTGCTTGCAGGTGGCTGCAACGAGGGTCAGGGCCATCTGGGGGTGCT
AAGAGAGGGATGCAGGTAGGTGTGGTTGTCCCAAGGACTAGGAGGTTCCC
CTGGAGGACAAACCAAGGCTGTTAAGCATCCTGCTATGTGTGTGACAGAT
TTTCTTTGTCTCGGTTTGGTTTCTGTTGCTGTGATAAACACTAGGACCCA
CAACAACTTAGGGGAGGAGAAGATTTATCTATCTGGCTTTAACGCTATAG
TACTTCCCTGAAGGAAGTTGCCCTGGCTATCCATCAATCAACCTATCTAC
TCATCTATCTTTCTTTCTTTCTTTCTAACCATCCTTTTCCTCATCCTTCC
GTCCTATCCTCCATCCATCTCTCCCTCCCTACATTCCTTATATTTATCCA
CCCCCTCCTACTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_k20.g1 MSMg01no401_k20.g1 CHROMAT_FILE:
MSMg01no401_k20.g1 PHD_FILE: MSMg01no401_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:21 2005
         (468 letters)



>mm_chr6_99965467_99966334
          Length = 868

 Score =  853 bits (441), Expect = 0.0
 Identities = 461/473 (97%), Gaps = 10/473 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaagccatttctcaaggtgcatgctgacttgcagcccctggctgcggcccattctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 atgaagccatttctcaaggtgcatgctgacttgcagcccctggctgcgggccattctgcc 260

                                                                       
Query: 61  atcctggggcttggcggtcattcttgttttttggttgtctgcttttgttacttgtgtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctggggcttggcggtcattcttgttttttggttgtctgcttttgttacttgtgtggc 320

                                                                       
Query: 121 tacttttgtcttggcctggataccacatagcacaaggccatctcctggccaaacccccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacttttgtcttggcctggataccacatagcacaaggccatctcctggccaaacccccag 380

                                                                       
Query: 181 gaatgaaaaggtgtgtgtactgctctaagctctgagaacgcttcaacataggacccatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatgaaaaggtgtgtgtactgctctaagctctgagaacgcttcaacataggacccatta 440

                                                                       
Query: 241 gccttactttttatc-----aaagtaggtaagccttagacactagtgcttgcaggtggct 295
           |||||||     | |     ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccttac-----aaccaagcaaagtaggtaagccttagacactagtgcttgcaggtggct 495

                                                                       
Query: 296 gcaacgagggtcagggccatctgggggtgctaagagagggatgcaggtaggtgtggttgt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gcaacgagggtcagggccatctgggggtgctaagagagggatgcaggtaggtgtggttgt 555

                                                                       
Query: 356 cccaaggactaggaggttcccctggaggacaaaccaaggctgttaagcatcctgctatgt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cccaaggactaggaggttcccctggaggacaaaccaaggctgttaagcatcctgctatgt 615

                                                                
Query: 416 gtgtgacagattttctttgtctcggtttggtttctgttgctgtgataaacact 468
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtgtgacagattttctttgtctcggtttggtttctgttgctgtgataaacact 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)