BAC Information

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BAC

Clone NameMSMg01-401L02
Chromosome6 (Build37)
Map Location 30,015,727 - 30,016,196
singlet/doubletsinglet
Overlap geneNrf1
Upstream geneLep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik
Downstream geneUbe2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401L02.T7 (MSMg01no401_l02.b1)MSMg01-401L02.TJ (MSMg01no401_l02.g1)
ACCAG501016AG501017
length759770
length of high quality
(start - end)
474 (73 - 546)518 (85 - 602)
definitionCHROMAT_FILE: MSMg01no401_l02.b1 PHD_FILE: MSMg01no401_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:23 2005CHROMAT_FILE: MSMg01no401_l02.g1 PHD_FILE: MSMg01no401_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGACATCCG
CGGAATTCTTGGGTTACTATATTTTTCTTTTGNGATTTGGAAAGGTTTGT
CTTATTATTAAGTAACAAAATAGGTACTATTTATCTACCTTAACATATTT
GACGTGTTTTCTTCTCCAAGTAATTTAAACAGTTCTGTTTCACATCCATG
TAACAAGTGAGTTCAAGGGATTGAATGGCTTTCTATTCCCATTTGTCTGC
TTTCTTTCATAATACCAGTTTCACAGTTGTGTTAATTCAGTGTGGTTCTA
TTTATTACTACATAAAGTAAATTTTTTTTTGGATGGTGGCTCACATCTGT
AATTCCAGCAATCATGGTGCAGAGACAAGAGGCTGGACACACGAGTTTTA
GGTCAACCTGGTCTACTCTGGCAAGTTCCAACCCAGCCCAGGGCCACACA
GTGAGACCCTGAATAGAAAAGAAGGCAAAGCAACAAAGAAGTGACATCAT
TCAGAGAGAAGCACTTTCACAGGCCTTTCTTTTTCTGGCGTGTTGTGCTG
TGTTGTGGTGTGCTGTACCAAAATATTTGTGCTTTACTCGCTGTTGCTGC
TTTGTTATCCACTCATCTCCTTGTTTGTTCACCTGTTTATATCCTTCCCG
CAACTTGTCTAACTTTTTTTTTTTTTTCATCTTTCCCTCCACTTCCACCC
CCCTACTTTTACCTGCTCTCTTCCTTCTACCTTTATTTACCTTCTCTTCT
CCTTCCTTN
NCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTAACAACAAAATTCAGNCAGAAAGGAGNTGGTTA
CTCCATAACAGACTTGCCACTCCTGCTGCAGTAGGCTCATCTTGCCTGGT
GAGTCATTATTGCAGAGTCCACACCTGAGTAACAGCCACTGCTGACAGTT
CTCCACAGTAGCCTGTATAACAACATAGTACCTTTGGAGCCTTGGGGGCA
AGCCTCTTTAGGTAGGAAGCTTCTAGCCAGTTCTAGCTAGACCATCTAGT
TCTGGTGGGCAAACAAGAATATTTGTCATTGCTGTATTGTTTTGAAAGCC
CCAGGAGAAGCCTCTGTGACCACTAGGAAAGTAGTCTACTCTTGGCACTG
GGTTCTCCTTTAATAATGTATGGCTTCTGGACAGTTCTTGCCTTGGAACT
GGGGTTACATTCAAGTGCGGATTGCCCAATGTGAGTGTAAGGAGTCAAAT
TTGGGCCTTGCGGAGAAACAGCAAAGGCTTTTAACACTGAACCGTCTCCC
AATCAGTTCCTTTTTTCTTTGAACTGAGTTTAAAGGAAAAAAAATTATGC
CAGGTTGGGTTTTGGTGGCACACATCTTTTGATCCCCAGCATTTGTTAGG
CCAGAAGCGGTAAGTCTTCTTTATTACTTTCCAGCGCCAGCTCTTATCTT
ACCACTTCACGTTTTCCTAACAGCCCCAGTGCTACTCCATAATCAAACCC
TTGTTTTCAAAAATAAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_l02.b1 MSMg01no401_l02.b1 CHROMAT_FILE:
MSMg01no401_l02.b1 PHD_FILE: MSMg01no401_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:23 2005
         (474 letters)



>mm_chr6_30015527_30016400
          Length = 874

 Score =  857 bits (443), Expect = 0.0
 Identities = 464/471 (98%), Gaps = 2/471 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcttttgng-atttggaaaggtttgtcttattattaagtaacaaaataggtactatt 59
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcttttg-gtatttggaaaggtttgtcttattattaagtaacaaaataggtactatt 259

                                                                       
Query: 60  tatctaccttaacatatttgacgtgttttcttctccaagtaatttaaacagttctgtttc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tatctaccttaacatatttgacgtgttttcttctccaagtaatttaaacagttctgtttc 319

                                                                       
Query: 120 acatccatgtaacaagtgagttcaagggattgaatggctttctattcccatttgtctgct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acatccatgtaacaagtgagttcaagggattgaatggctttctattcccatttgtctgct 379

                                                                       
Query: 180 ttctttcataataccagtttcacagttgtgttaattcagtgtggttctatttattactac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttctttcataataccagtttcacagttgtgttaattcagtgtggttctatttattactac 439

                                                                       
Query: 240 ataaagtaaatttttttttggatggtggctcacatctgtaattccagcaatcatggtgca 299
           | ||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaaagtaaaccttcctttggatggtggctcacatctgtaattccagcaatcatggtgca 499

                                                                       
Query: 300 gagacaagaggctggacacacgagttttaggtcaacctggtctactctggcaagttccaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagacaagaggctggacacacgagttttaggtcaacctggtctactctggcaagttccaa 559

                                                                       
Query: 360 cccagcccagggccacacagtgagaccctgaatagaaaagaaggcaaagcaacaaagaag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cccagcccagggccacacagtgagaccctgaatagaaaagaaggcaaagcaacaaagaag 619

                                                              
Query: 420 tgacatcattcagagagaagcactttcacaggcctttctttttctggcgtg 470
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgacatcattcagagagaagcactttcacaggcctttctttttctggcgtg 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)