MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-401L17
Chromosome	6 (Build37)
Map Location	116,334,432 - 116,334,912
singlet/doublet	singlet
Overlap gene	March8
Upstream gene	Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1
Downstream gene	Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142
Link	Open Mouse BAC browser

Click to get alignment info.

name	Pparg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19016 MGI:97747
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tsen2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381802 MGI:2141599
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2510049J12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70291 MGI:1917541
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 1 Protein

name	Mkrn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67027 MGI:1914277
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Raf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110157 MGI:97847
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043759 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043759
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 56 ESTs, 9 Proteins pseudo : _no_value

name	D830050J10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:352968 MGI:2444203
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 19 ESTs

name	Tmem40 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94346 MGI:2137870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG620848 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:620848 MGI:3645704
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 147 ESTs, 22 Proteins

name	Cand2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67088 MGI:1914338
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpl32 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19951 MGI:98038
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC060267 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212516 MGI:2681834
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mbd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17193 MGI:1333850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ift122 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:81896 MGI:1932386
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rho (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212541 MGI:97914
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	H1foo (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171506 MGI:2176207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Plxnd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67784 MGI:2154244
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmcc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330401 MGI:2442368
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 50 ESTs, 5 Proteins

name	LOC100043425 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043425
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	EG666634 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666634 MGI:3646499
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 367 ESTs, 3 Proteins

name	EG666648 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666648 MGI:3643597
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 566 ESTs, 8 Proteins

name	D6Wsu116e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28006 MGI:106463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Anubl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67492 MGI:1914742
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	March8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71779 MGI:1919029
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Alox5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11689 MGI:87999
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043432 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043432
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Olfr211 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258914 MGI:3030045
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Olfr212 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258019 MGI:3030046
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Olfr213 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258020 MGI:3030047
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG434080 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434080 MGI:3646594
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 249 ESTs, 58 Proteins

name	Olfr214 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258754 MGI:3030048
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Olfr215 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258438 MGI:3030049
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp422 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67255 MGI:1914505
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rassf4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213391 MGI:2386853
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	8430408G22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213393 MGI:1918730
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C230095G01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319776 MGI:2442707
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043439 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043439
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Cxcl12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20315 MGI:103556
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	LOC213422 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:213422
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	EG640142 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:640142 MGI:3644618
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Pparg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367023 GeneID:19016 MGI:97747
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peroxisome proliferator activated receptor gamma transcript_id : NM_011146.2

name	Tsen2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39841064 GeneID:381802 MGI:2141599
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tRNA splicing endonuclease 2 homolog (SEN2, S. cerevisiae) transcript_id : NM_199033.1

name	2510049J12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94378035 GeneID:70291 MGI:1917541
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 1 Protein product : RIKEN cDNA 2510049J12 gene, transcript variant 1 transcript_id : XM_132808.3

name	Mkrn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88853569 GeneID:67027 MGI:1914277
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : makorin, ring finger protein, 2 transcript_id : NM_023290.2

name	Raf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142380030 GeneID:110157 MGI:97847
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : v-raf-leukemia viral oncogene 1 transcript_id : NM_029780.3

name	Tmem40 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450166 GeneID:94346 MGI:2137870
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 40 transcript_id : NM_144805.1

name	EG620848 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149255269 GeneID:620848 MGI:3645704
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 147 ESTs, 22 Proteins product : predicted gene, EG620848 transcript_id : XM_885235.3

name	Cand2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41281586 GeneID:67088 MGI:1914338
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cullin-associated and neddylation-dissociated 2 (putative) transcript_id : NM_025958.1

name	Rpl32 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142350300 GeneID:19951 MGI:98038
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein L32 transcript_id : NM_172086.2

name	BC060267 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38348451 GeneID:212516 MGI:2681834
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC060267 transcript_id : NM_198603.1

name	Mbd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754651 GeneID:17193 MGI:1333850
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : methyl-CpG binding domain protein 4 transcript_id : NM_010774.1

name	Ift122 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802332 GeneID:81896 MGI:1932386
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : intraflagellar transport 122 homolog (Chlamydomonas) transcript_id : NM_031177.2

name	Rho (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21717804 GeneID:212541 MGI:97914
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : rhodopsin transcript_id : NM_145383.1

name	H1foo (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129974 GeneID:171506 MGI:2176207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : H1 histone family, member O, oocyte-specific transcript_id : NM_138311.2

name	Plxnd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347282 GeneID:67784 MGI:2154244
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : plexin D1 transcript_id : NM_026376.2

name	Tmcc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94378039 GeneID:330401 MGI:2442368
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 50 ESTs, 5 Proteins product : transmembrane and coiled coil domains 1, transcript variant 2 transcript_id : XM_892747.2

name	LOC100043425 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149255270 GeneID:100043425
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100043425 transcript_id : XM_001480143.1

name	EG666634 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94378040 GeneID:666634 MGI:3646499
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 367 ESTs, 3 Proteins product : predicted gene, EG666634, transcript variant 1 transcript_id : XM_001000460.1

name	EG666648 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94378044 GeneID:666648 MGI:3643597
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 566 ESTs, 8 Proteins product : predicted gene, EG666648 transcript_id : XM_985182.1

name	D6Wsu116e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802662 GeneID:28006 MGI:106463
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 6, Wayne State University 116, expressed transcript_id : NM_026585.2

name	Anubl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486776 GeneID:67492 MGI:1914742
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AN1, ubiquitin-like, homolog (Xenopus laevis) transcript_id : NM_001081317.1

name	March8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892872 GeneID:71779 MGI:1919029
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : membrane-associated ring finger (C3HC4) 8 transcript_id : NM_027920.4

name	Alox5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116686109 GeneID:11689 MGI:87999
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : arachidonate 5-lipoxygenase transcript_id : NM_009662.2

name	Olfr211 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22129064 GeneID:258914 MGI:3030045
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 211 transcript_id : NM_146912.1

name	Olfr212 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:74271897 GeneID:258019 MGI:3030046
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 212 transcript_id : NM_001011800.2

name	Olfr213 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58801367 GeneID:258020 MGI:3030047
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 213 transcript_id : NM_001011801.1

name	EG434080 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94378048 GeneID:434080 MGI:3646594
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 249 ESTs, 58 Proteins product : predicted gene, EG434080 transcript_id : XM_485817.4

name	Olfr214 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22129326 GeneID:258754 MGI:3030048
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 214 transcript_id : NM_146759.1

name	Olfr215 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33239317 GeneID:258438 MGI:3030049
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 215 transcript_id : NM_146446.1

name	Zfp422 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388585 GeneID:67255 MGI:1914505
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 422 transcript_id : NM_026057.2

name	Rassf4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254291 GeneID:213391 MGI:2386853
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Ras association (RalGDS/AF-6) domain family 4 transcript_id : NM_178045.3

name	8430408G22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122424 GeneID:213393 MGI:1918730
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 8430408G22 gene transcript_id : NM_145980.1

name	C230095G01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803540 GeneID:319776 MGI:2442707
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C230095G01 gene transcript_id : NM_178768.4

name	LOC100043439 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149255272 GeneID:100043439
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to cyclic nucleotide gated channel beta 1 transcript_id : XM_001480170.1

name	Cxcl12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:60279261 GeneID:20315 MGI:103556
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-X-C motif) ligand 12 transcript_id : NM_001012477.1

name	Cxcl12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:60279260 GeneID:20315 MGI:103556
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-X-C motif) ligand 12 transcript_id : NM_013655.3

name	Cxcl12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:60279259 GeneID:20315 MGI:103556
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-X-C motif) ligand 12 transcript_id : NM_021704.2

name	EG640142 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149255276 GeneID:640142 MGI:3644618
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : predicted gene, EG640142 transcript_id : XM_924578.3

name	Pparg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755138 CCDS:CCDS20439.1 GeneID:19016 MGI:97747
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0017053 - transcriptional repressor complex [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA] [Evidence IPI]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence TAS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0016563 - transcriptional activator activity [Evidence IDA]; GO:0016564 - transcriptional repressor activity [Evidence IMP] [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045165 - cell fate commitment [Evidence IGI]; GO:0030855 - epithelial cell differentiation [Evidence IGI]; GO:0045444 - fat cell differentiation [Evidence IGI] [Evidence IDA]; GO:0006954 - inflammatory response [Evidence TAS]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045892 - negative regulation of transcription, DNA-dependent [Evidence IMP]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045598 - regulation of fat cell differentiation [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : peroxisome proliferator activated receptor gamma 2 product : peroxisome proliferator activated receptor gamma protein_id : NP_035276.1

name	Tsen2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39841065 CCDS:CCDS20440.1 GeneID:381802 MGI:2141599
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0000214 - tRNA-intron endonuclease complex [Evidence IEA] GO_function : GO:0004519 - endonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0000213 - tRNA-intron endonuclease activity [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0008033 - tRNA processing [Evidence IEA]; GO:0006388 - tRNA splicing [Evidence IEA] codon_start : 1 product : tRNA splicing endonuclease 2 homolog protein_id : NP_950198.1

name	2510049J12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20831077 GeneID:70291 MGI:1917541
definition	codon_start : 1 product : hypothetical protein LOC70291 isoform 1 protein_id : XP_132808.1

name	Mkrn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88853570 GeneID:67027 MGI:1914277
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence ISS] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : makorin, ring finger protein, 2 (MGD\|MGI:1914277 GB\|NM_023290, evidence: BLASTN, 99%, match=2209); putative; Makorin RING zinc-finger protein 2 product : makorin, ring finger protein, 2 protein_id : NP_075779.2

name	Raf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18497290 CCDS:CCDS20441.1 GeneID:110157 MGI:97847
definition	GO_component : GO:0005829 - cytosol [Evidence TAS]; GO:0005622 - intracellular [Evidence IEA]; GO:0005886 - plasma membrane [Evidence TAS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence TAS]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0005057 - receptor signaling protein activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IMP] [Evidence IGI]; GO:0050875 - cellular physiological process [Evidence IEA]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007243 - protein kinase cascade [Evidence TAS]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : sarcoma 3611 oncogene; murine sarcoma 3611 oncogene 1; v-raf-1 leukemia viral oncogene 1; Craf1 transforming product : protein kinase raf 1 protein_id : NP_084056.1

name	Tmem40 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450167 GeneID:94346 MGI:2137870
definition	codon_start : 1 exception : mismatches in translation product : transmembrane protein 40 protein_id : NP_659054.1

name	EG620848 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94378038 GeneID:620848 MGI:3645704
definition	codon_start : 1 product : hypothetical protein protein_id : XP_890328.2

name	Cand2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41281587 CCDS:CCDS20442.1 GeneID:67088 MGI:1914338
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0017025 - TATA-binding protein binding [Evidence IDA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation product : TBP-interacting protein b protein_id : NP_080234.1

name	Rpl32 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:25742730 CCDS:CCDS20443.1 GeneID:19951 MGI:98038
definition	GO_component : GO:0005842 - cytosolic large ribosomal subunit (sensu Eukaryota) [Evidence IDA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence IDA] GO_process : GO:0006412 - protein biosynthesis [Evidence IDA] codon_start : 1 note : snoRNA MBI-141 product : ribosomal protein L32 protein_id : NP_742083.1

name	BC060267 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348452 GeneID:212516 MGI:2681834
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC212516 protein_id : NP_941005.1

name	Mbd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754652 GeneID:17193 MGI:1333850
definition	GO_component : GO:0000785 - chromatin [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0006284 - base-excision repair [Evidence IEA]; GO:0008630 - DNA damage response, signal transduction resulting in induction of apoptosis [Evidence IMP]; GO:0006306 - DNA methylation [Evidence TAS]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IMP]; GO:0009314 - response to radiation [Evidence IMP] codon_start : 1 exception : mismatches in translation product : methyl-CpG binding domain protein 4 protein_id : NP_034904.1

name	Ift122 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794218 CCDS:CCDS20445.1 GeneID:81896 MGI:1932386
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0019861 - flagellum [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : WD repeat domain 10 protein_id : NP_112454.1

name	Rho (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21717805 CCDS:CCDS20446.1 GeneID:212541 MGI:97914
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0001750 - photoreceptor outer segment [Evidence IDA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0009583 - detection of light stimulus [Evidence IMP]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007602 - phototransduction [Evidence IEA]; GO:0018298 - protein-chromophore linkage [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 note : L opsin; LWS opsin; Red Opsin; Rod Opsin; Long Wavelength Sensitive opsin; opsin 2 product : rhodopsin protein_id : NP_663358.1

name	H1foo (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19923865 CCDS:CCDS20447.1 GeneID:171506 MGI:2176207
definition	GO_component : GO:0001674 - female germ cell nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence ISS] [Evidence IEA] GO_process : GO:0006334 - nucleosome assembly [Evidence IEA] [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : H1 histone family, member O (oocyte-specific); H1 histone family, member O, oocyte-specific) product : H1 histone family, member O, oocyte-specific protein_id : NP_612184.1

name	Plxnd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037103 CCDS:CCDS20448.1 GeneID:67784 MGI:2154244
definition	GO_component : GO:0005886 - plasma membrane [Evidence IC] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0017154 - semaphorin receptor activity [Evidence IPI] GO_process : GO:0007275 - development [Evidence IEA]; GO:0001569 - patterning of blood vessels [Evidence IMP] codon_start : 1 exception : mismatches in translation product : plexin D1 protein_id : NP_080652.1

name	Tmcc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83029742 GeneID:330401 MGI:2442368
definition	codon_start : 1 product : transmembrane and coiled coil domains 1 isoform 2 protein_id : XP_897840.1

name	LOC100043425 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149255271 GeneID:100043425
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480193.1

name	EG666634 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94378041 GeneID:666634 MGI:3646499
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001000460.1

name	EG666648 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94378045 GeneID:666648 MGI:3643597
definition	codon_start : 1 product : similar to ribosomal protein L27a-like protein_id : XP_990276.1

name	D6Wsu116e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27261816 CCDS:CCDS20450.1 GeneID:28006 MGI:106463
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0004427 - inorganic diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA] GO_process : GO:0006796 - phosphate metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC28006 protein_id : NP_080861.1

name	Anubl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486777 GeneID:67492 MGI:1914742
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006464 - protein modification [Evidence IEA] codon_start : 1 product : AN1, ubiquitin-like, homolog protein_id : NP_001074786.1

name	March8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229135 CCDS:CCDS20451.1 GeneID:71779 MGI:1919029
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : c-mir, cellular modulator of immune recognition product : membrane-associated ring finger (C3HC4) 8 protein_id : NP_082196.1

name	Alox5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62526037 CCDS:CCDS20452.1 GeneID:11689 MGI:87999
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0004051 - arachidonate 5-lipoxygenase activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016165 - lipoxygenase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IMP]; GO:0019370 - leukotriene biosynthesis [Evidence IEA]; GO:0006691 - leukotriene metabolism [Evidence IMP] codon_start : 1 product : arachidonate 5-lipoxygenase protein_id : NP_033792.1

name	Olfr211 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22129065 CCDS:CCDS20453.1 GeneID:258914 MGI:3030045
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : GA_x54KRFPKN04-58127726-58128655; olfactory receptor MOR253-9 product : olfactory receptor 211 protein_id : NP_667123.1

name	Olfr212 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58801366 CCDS:CCDS20454.1 GeneID:258019 MGI:3030046
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS] GO_function : GO:0004984 - olfactory receptor activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : GA_x54KRFPKN04-58149882-58150865; olfactory receptor MOR119-4 product : olfactory receptor 212 protein_id : NP_001011800.1

name	Olfr213 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58801368 CCDS:CCDS20455.1 GeneID:258020 MGI:3030047
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : GA_x54KRFPKN04-58174409-58175392; olfactory receptor MOR119-3 product : olfactory receptor 213 protein_id : NP_001011801.1

name	EG434080 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51717030 GeneID:434080 MGI:3646594
definition	codon_start : 1 product : similar to Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna protein_id : XP_485817.1

name	Olfr214 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22129327 CCDS:CCDS20457.1 GeneID:258754 MGI:3030048
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : GA_x54KRFPKN04-58190962-58191900; olfactory receptor MOR119-1 product : olfactory receptor 214 protein_id : NP_666970.1

name	Olfr215 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33239318 CCDS:CCDS20458.1 GeneID:258438 MGI:3030049
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : GA_x54KRFPKN04-58217732-58216800; olfactory receptor MOR119-2 product : olfactory receptor 215 protein_id : NP_666657.1

name	Zfp422 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28076891 CCDS:CCDS20459.1 GeneID:67255 MGI:1914505
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0042476 - odontogenesis [Evidence NAS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : Kruppel type zinc finger protein Krox26 product : zinc finger protein 422 protein_id : NP_080333.1

name	Rassf4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254292 CCDS:CCDS20460.1 GeneID:213391 MGI:2386853
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation product : Ras association (RalGDS/AF-6) domain family 4 protein_id : NP_835146.2

name	8430408G22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122425 GeneID:213393 MGI:1918730
definition	codon_start : 1 note : fat-specific expressed product : RIKEN cDNA 8430408G22 protein_id : NP_666092.1

name	C230095G01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982359 CCDS:CCDS20462.1 GeneID:319776 MGI:2442707
definition	codon_start : 1 product : hypothetical protein LOC319776 protein_id : NP_848883.2

name	LOC100043439 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149255273 GeneID:100043439
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480220.1

name	Cxcl12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305465 GeneID:20315 MGI:103556
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IDA] [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0008083 - growth factor activity [Evidence IEA] GO_process : GO:0001667 - ameboidal cell migration [Evidence IMP]; GO:0007420 - brain development [Evidence IDA]; GO:0006935 - chemotaxis [Evidence IEA]; GO:0007281 - germ cell development [Evidence IDA]; GO:0008354 - germ cell migration [Evidence IDA]; GO:0006955 - immune response [Evidence IEA]; GO:0050930 - induction of positive chemotaxis [Evidence IDA]; GO:0008045 - motor axon guidance [Evidence IMP]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0030335 - positive regulation of cell migration [Evidence IDA]; GO:0030334 - regulation of cell migration [Evidence IDA]; GO:0042098 - T cell proliferation [Evidence IMP] codon_start : 1 note : isoform beta precursor is encoded by transcript variant 2; pre-B-cell growth-stimulating factor product : stromal cell derived factor 1 isoform beta precursor protein_id : NP_038683.1

name	Cxcl12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:60279262 CCDS:CCDS20463.1 GeneID:20315 MGI:103556
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IDA] [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0008083 - growth factor activity [Evidence IEA] GO_process : GO:0001667 - ameboidal cell migration [Evidence IMP]; GO:0007420 - brain development [Evidence IDA]; GO:0006935 - chemotaxis [Evidence IEA]; GO:0007281 - germ cell development [Evidence IDA]; GO:0008354 - germ cell migration [Evidence IDA]; GO:0006955 - immune response [Evidence IEA]; GO:0050930 - induction of positive chemotaxis [Evidence IDA]; GO:0008045 - motor axon guidance [Evidence IMP]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0030335 - positive regulation of cell migration [Evidence IDA]; GO:0030334 - regulation of cell migration [Evidence IDA]; GO:0042098 - T cell proliferation [Evidence IMP] codon_start : 1 note : isoform gamma precursor is encoded by transcript variant 3; pre-B-cell growth-stimulating factor product : stromal cell derived factor 1 isoform gamma precursor protein_id : NP_001012495.1

name	Cxcl12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12025676 GeneID:20315 MGI:103556
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IDA] [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0008083 - growth factor activity [Evidence IEA] GO_process : GO:0001667 - ameboidal cell migration [Evidence IMP]; GO:0007420 - brain development [Evidence IDA]; GO:0006935 - chemotaxis [Evidence IEA]; GO:0007281 - germ cell development [Evidence IDA]; GO:0008354 - germ cell migration [Evidence IDA]; GO:0006955 - immune response [Evidence IEA]; GO:0050930 - induction of positive chemotaxis [Evidence IDA]; GO:0008045 - motor axon guidance [Evidence IMP]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0030335 - positive regulation of cell migration [Evidence IDA]; GO:0030334 - regulation of cell migration [Evidence IDA]; GO:0042098 - T cell proliferation [Evidence IMP] codon_start : 1 note : isoform alpha precursor is encoded by transcript variant 1; pre-B-cell growth-stimulating factor product : stromal cell derived factor 1 isoform alpha precursor protein_id : NP_068350.1

name	EG640142 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149255277 GeneID:640142 MGI:3644618
definition	codon_start : 1 product : hypothetical protein protein_id : XP_929671.3

name	LOC100043432 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043432
definition	number : 1 pseudo : _no_value

name	LOC100043432 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043432
definition	number : 2 pseudo : _no_value

name	LOC213422 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:213422
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:186027
definition	standard_name : BB157820

name	(CDS detail)
type	STS
link
xref	UniSTS:271631
definition	standard_name : PMC171387P3

name	(CDS detail)
type	STS
link
xref	UniSTS:271629
definition	standard_name : PMC171387P1

name	(CDS detail)
type	STS
link
xref	UniSTS:271630
definition	standard_name : PMC171387P2

name	(CDS detail)
type	STS
link
xref	UniSTS:179440
definition	standard_name : AU067695

name	(CDS detail)
type	STS
link
xref	UniSTS:235526
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:208014
definition	standard_name : RH127069

name	(CDS detail)
type	STS
link
xref	UniSTS:469819
definition	standard_name : Raf1

name	(CDS detail)
type	STS
link
xref	UniSTS:160660
definition	standard_name : AA990557

name	(CDS detail)
type	STS
link
xref	UniSTS:185679
definition	standard_name : BB129353

name	(CDS detail)
type	STS
link
xref	UniSTS:259519
definition	standard_name : Raf1

name	(CDS detail)
type	STS
link
xref	UniSTS:270498
definition	standard_name : PMC125416P1

name	(CDS detail)
type	STS
link
xref	UniSTS:130964
definition	standard_name : D6Mit62

name	(CDS detail)
type	STS
link
xref	UniSTS:130964
definition	standard_name : D6Mit62

name	(CDS detail)
type	STS
link
xref	UniSTS:165483
definition	standard_name : AV091463

name	(CDS detail)
type	STS
link
xref	UniSTS:218442
definition	standard_name : RH135165

name	(CDS detail)
type	STS
link
xref	UniSTS:235528
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:268736
definition	standard_name : MARC_23652-23653:1029502677:1

name	(CDS detail)
type	STS
link
xref	UniSTS:11774
definition	standard_name : D3S2347

name	(CDS detail)
type	STS
link
xref	UniSTS:185681
definition	standard_name : BB124106

name	(CDS detail)
type	STS
link
xref	UniSTS:163398
definition	standard_name : AF072249

name	(CDS detail)
type	STS
link
xref	UniSTS:270832
definition	standard_name : PMC137523P1

name	(CDS detail)
type	STS
link
xref	UniSTS:143837
definition	standard_name : Mbd4

name	(CDS detail)
type	STS
link
xref	UniSTS:179442
definition	standard_name : C86139

name	(CDS detail)
type	STS
link
xref	UniSTS:468014
definition	standard_name : Rho

name	(CDS detail)
type	STS
link
xref	UniSTS:130950
definition	standard_name : D6Mit44

name	(CDS detail)
type	STS
link
xref	UniSTS:271644
definition	standard_name : PMC17675P2

name	(CDS detail)
type	STS
link
xref	UniSTS:208018
definition	standard_name : BB282502

name	(CDS detail)
type	STS
link
xref	UniSTS:159561
definition	standard_name : M55171

name	(CDS detail)
type	STS
link
xref	UniSTS:208016
definition	standard_name : RH126702

name	(CDS detail)
type	STS
link
xref	UniSTS:208017
definition	standard_name : RH127285

name	(CDS detail)
type	STS
link
xref	UniSTS:32813
definition	standard_name : D12S1329

name	(CDS detail)
type	STS
link
xref	UniSTS:235529
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:130696
definition	standard_name : D6Mit150.1

name	(CDS detail)
type	STS
link
xref	UniSTS:130695
definition	standard_name : D6Mit150

name	(CDS detail)
type	STS
link
xref	UniSTS:157324
definition	standard_name : GDB:451604

name	(CDS detail)
type	STS
link
xref	UniSTS:124502
definition	standard_name : 43.MMHAP4FRG10.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:142646
definition	standard_name : D6Wsu116e

name	(CDS detail)
type	STS
link
xref	UniSTS:161701
definition	standard_name : RH124879

name	(CDS detail)
type	STS
link
xref	UniSTS:118875
definition	standard_name : D4Rat83

name	(CDS detail)
type	STS
link
xref	UniSTS:179444
definition	standard_name : AV260042

name	(CDS detail)
type	STS
link
xref	UniSTS:235531
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:179443
definition	standard_name : AI850497

name	(CDS detail)
type	STS
link
xref	UniSTS:494361
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:489466
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:494346
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:489428
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:495601
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:485096
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:185680
definition	standard_name : AI586137

name	(CDS detail)
type	STS
link
xref	UniSTS:130658
definition	standard_name : D6Mit115

name	(CDS detail)
type	STS
link
xref	UniSTS:167493
definition	standard_name : AU021719

name	(CDS detail)
type	STS
link
xref	UniSTS:130921
definition	standard_name : D6Mit367

name	(CDS detail)
type	STS
link
xref	UniSTS:130884
definition	standard_name : D6Mit330

name	(CDS detail)
type	STS
link
xref	UniSTS:144385
definition	standard_name : Sdf1

name	(CDS detail)
type	STS
link
xref	UniSTS:179445
definition	standard_name : AI174028

name	(CDS detail)
type	STS
link
xref	UniSTS:235532
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:159562
definition	standard_name : L12030

name	(CDS detail)
type	STS
link
xref	UniSTS:144384
definition	standard_name : Sdf1

name	LOC100043759 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149255400 GeneID:100043759
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 56 ESTs, 9 Proteins product : similar to RNA polymerase II TATA box binding protein-associated factor G pseudo : _no_value transcript_id : XR_034896.1

name	D830050J10Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149255268 GeneID:352968 MGI:2444203
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 19 ESTs product : RIKEN cDNA D830050J10 gene transcript_id : XR_035449.1

clone name	MSMg01-525H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-212P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307I22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-401L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507D21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-201I04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-317J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-202N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268F20
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-401L17.T7 (MSMg01no401_l17.b1)	MSMg01-401L17.TJ (MSMg01no401_l17.g1)
ACC	AG501046	AG501047
length	770	785
length of high quality (start - end)	453 (70 - 522)	483 (76 - 558)
definition	CHROMAT_FILE: MSMg01no401_l17.b1 PHD_FILE: MSMg01no401_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:25 2005	CHROMAT_FILE: MSMg01no401_l17.g1 PHD_FILE: MSMg01no401_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:26 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATCCGCGGAAT TCCCAAAGTATACCCGTACATCTACTGTAGGATCTAGCTACAGCATTCCC TGCGGGTGTATGTCCAAGGACTTGACTTCCTATCCACTGACGCTGCTCAG CCGTAGTAACTGCTGCTCCATTCTCAATAGCCAAACAATGGACAACCCTA AATGTCTTCAGCGCATTACTGAATCATGAGAATGTGGTCTGTATATACGA CGTATTAACACTCAGTTGTCACAAAAAATAACATCATAAAGTCTGAGTGA ATGATGGAACTGGACAGTATCTCTCTAAGTGAGGTAACCTAGATCTAGAA TGGCAAACACTGCATGCTCCAGTAGATGTCACTGAGGCACAGAGCCTTGC TCGGAGCCTGATACTGTTCAGAACCCAAACTAGACGGATACATTTTTTTT TAAAGATTTATTTATTTATTTTATGTATATGAATACACTGTAGCTGTACA GATGGTTGTGAGCCTTCATGTGGTTGTTGGGAATTGAATTTAGGACCTTT GTTCGCTCCAGCTGGCCCCGCTCGCTCCAGCCCAAAGATTTATTATTAAT AACTACCCTGTACTCGTCTTTCCATGCACCAGAATAAGTGCATTAAATCT CATTATGTTTTTTTTGTTTGTCACCATGTTTTTGCTGGAATCCTGACTCC TCTCCTTTTTAAACATTTCCCATTCCTTTTACCCCTTTTACCCTTTTCCC CCTTCGTACCTTTTTCTCTG	GAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGAGTTATGTAGAGA CCCTGTTTCATAAATAAATAAATAGTAAAAAATTAATTTTAGAAGCTAGA GAGATAGCTCAGCAGTTAGGAGCACTGACTGTTCTTCAAGAGGACCCAAT TTCAATTCCCAACACCTACATGGCAGCTCACAACTGTCTGTAACTTTAGC TCCACACCATCTTTCTTTGTAAGGATAAGGAGGATGTTTCCCAGTCTCCA GCAGCTCTTCTCAGTGGGAGCTTTGTTTATAGTAGGCTCTTGCTAGCCTG ACATACTCAGGGAGGAGGGGGGTTGGCAGAGAATATATAACAACATCAAG AGTTGAGTTGAGAAGGAGGGCAGAAAGGGTCAGCATGACAGTATCTATCT CTCTATTGGAGTTATTGTGTCCCAGTACTACATTTTGACATTGTAAAAAG GTGCGTGTGTGTGTATGCATACATGTATATGTATGTGCATGTGTGGGCAC ACTTGCCACAGTTCACATGTAGAACTCAGAGAACAGTTTTGGAGTTTCGG CTCAATAGATCGTCAGCTCACAGTTGATCGCCCGATCACGACCCCCCCTC TTAATACGTTATTCATTGTTTTTCCTGCGGGGTAATTGATCCTTCCTGTT TCTTTCCCGGTTATCCACCTTTTTCTCCCTCCTTGTACACGGATATTACC GATTATACCCACTACAATTTACCCCCCCTCTCCCG
quality values	Open. Hide. 7 7 10 11 16 16 16 15 25 23 28 26 24 23 20 15 14 9 9 10 25 25 59 27 22 28 25 27 21 19 10 8 12 13 11 8 8 9 9 9 10 15 18 22 25 29 19 19 14 28 30 30 37 37 33 22 19 11 6 6 6 6 6 8 6 7 8 7 9 9 16 23 37 41 46 46 47 48 48 37 37 39 39 47 47 57 59 59 43 40 40 40 40 47 48 48 48 57 59 59 57 57 57 57 57 59 59 59 57 68 57 57 42 42 35 35 28 36 36 41 41 41 47 50 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 44 44 43 44 50 57 57 68 59 59 59 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 42 42 50 57 57 68 68 68 68 68 68 68 57 44 36 20 19 19 15 15 15 29 35 48 57 54 57 57 57 57 48 48 57 59 68 68 57 57 57 57 57 57 57 68 57 57 57 57 57 57 57 37 41 19 18 15 30 30 48 48 48 47 59 57 57 57 57 57 57 57 57 57 48 48 48 43 43 40 40 39 30 28 16 13 7 8 7 7 7 7 7 8 10 18 21 31 35 47 43 43 46 46 46 48 57 37 39 35 35 35 47 47 47 43 43 43 48 47 46 43 43 33 39 39 43 43 57 57 47 43 43 43 43 43 43 37 40 36 36 36 28 35 37 44 44 54 48 57 48 44 44 42 42 37 43 43 47 42 42 35 42 42 43 59 57 43 43 42 42 28 32 23 27 27 44 44 59 43 43 43 59 59 54 57 44 44 29 29 35 43 38 50 43 37 37 43 38 43 31 31 42 43 52 52 52 59 59 57 52 52 57 57 59 54 54 54 50 57 57 54 54 54 57 57 48 48 48 47 47 43 43 47 47 47 57 43 43 43 47 42 42 37 37 37 43 43 47 42 42 28 30 30 40 40 57 48 27 27 12 12 12 27 22 35 42 42 30 30 28 28 32 32 28 32 23 32 24 28 21 25 23 32 33 30 24 32 26 18 14 14 34 23 18 20 19 21 14 15 15 25 27 37 37 37 32 27 20 21 11 11 21 17 19 21 30 28 28 12 12 12 18 16 19 19 17 10 12 9 9 9 11 13 9 9 8 8 7 7 9 13 13 11 13 12 11 10 10 13 11 13 15 23 18 18 11 22 20 13 13 10 14 10 10 10 8 10 10 16 12 11 8 8 8 8 10 10 8 8 10 10 10 10 10 10 15 12 12 12 8 8 10 8 8 6 6 8 8 9 9 9 11 11 12 11 9 8 8 8 8 8 8 11 11 16 13 10 10 10 11 11 13 11 8 8 8 10 8 11 14 15 11 6 6 6 7 6 8 8 8 8 8 8 6 6 8 8 9 8 8 8 8 8 8 8 8 8 8 10 12 12 9 8 8 10 8 8 9 13 17 15 8 8 10 9 7 10 7 7 7 8 11 11 13 11 11 10 13 8 8 8 10 11 12 11 16 16 12 12 11 10 10 10 10 10 10 8 8 8 20 19 24 11 15 10 10 10 8 8 8 8 8 6 6 6 6 6 7 14 19 24 27 25 25 14 13 9 9	Open. Hide. 6 6 7 10 10 6 6 8 8 8 9 9 16 20 37 37 32 32 37 41 41 39 39 39 35 37 44 41 21 23 8 7 7 7 9 9 11 13 10 10 10 15 16 30 24 24 34 34 33 33 36 37 33 33 50 42 41 33 25 17 9 9 9 12 12 11 11 10 10 8 9 13 13 23 22 30 33 33 33 33 36 36 36 36 47 50 50 53 57 53 53 53 53 53 53 57 57 50 53 68 68 68 68 68 68 68 42 42 41 36 36 42 44 68 68 68 48 48 43 41 39 42 39 42 35 35 37 42 47 57 57 50 50 50 50 68 68 68 68 68 68 68 68 57 59 68 68 68 68 68 68 48 48 42 42 42 48 57 68 57 57 57 57 57 54 57 57 57 68 57 57 57 57 54 57 57 57 57 57 57 68 68 68 59 57 57 54 54 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 44 43 43 43 44 47 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 41 41 32 28 28 21 29 10 10 10 10 10 10 10 15 10 19 36 59 59 59 59 59 59 59 59 59 59 59 59 59 57 53 53 53 53 50 57 59 57 57 57 57 57 57 59 57 57 57 54 54 54 57 47 59 43 43 43 48 47 54 57 59 59 57 68 57 57 57 57 57 57 54 48 57 57 57 43 42 42 35 35 35 47 47 48 48 48 57 57 54 57 57 59 46 50 43 47 47 50 50 57 44 57 43 43 44 50 57 57 52 52 52 43 42 43 33 33 35 59 59 59 59 59 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 59 59 48 48 48 42 39 35 32 32 36 36 37 37 37 48 57 57 57 54 54 57 57 57 57 57 57 43 43 37 44 32 35 35 44 44 43 39 39 27 27 20 20 18 32 25 32 28 31 22 23 23 19 19 26 24 23 32 32 43 36 36 26 30 21 28 28 28 28 30 22 22 24 21 30 28 22 29 28 24 24 28 31 17 13 12 12 12 20 23 30 37 37 18 15 10 10 10 13 15 15 15 12 12 14 26 15 21 21 13 13 13 13 13 14 15 14 14 14 12 11 11 11 13 21 24 28 32 28 12 12 16 11 10 10 10 10 10 10 11 12 12 12 12 12 11 12 11 12 9 8 8 6 6 8 8 11 11 11 13 15 13 13 10 10 15 15 10 11 8 8 8 8 8 8 8 8 8 8 10 10 10 12 14 10 8 10 8 8 8 10 8 8 8 8 8 9 9 10 9 9 9 9 8 8 8 13 8 8 8 8 8 10 10 10 10 10 10 12 13 18 13 11 10 9 10 10 11 8 8 8 8 8 8 10 8 9 8 10 9 12 11 10 8 8 8 12 13 14 12 12 6 6 8 8 7 7 8 8 10 11 10 10 10 9 14 12 12 7 7 7 6 10 9 8 8 6 6 8 6 8 8 8 8 8 8 8 6 8 8 8 8 8 6 6 6 8 15 6 6 6 10 12 10 9 9 6 8 7 6 8 8 11 12 23 21 8 8 8 9 6 8 8 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no401_l17.g1 MSMg01no401_l17.g1 CHROMAT_FILE:
MSMg01no401_l17.g1 PHD_FILE: MSMg01no401_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:26 2005
         (483 letters)



>mm_chr6_116334111_116334991
          Length = 881

 Score =  849 bits (439), Expect = 0.0
 Identities = 472/485 (97%), Gaps = 6/485 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagagttatgtagagaccctgtttcataaataaataaatagt--aaaaaat 58
           |||||||||||||||||||||||||||  | ||||||||||||||||||||  |||||| 
Sbjct: 802 caggacagccagagttatgtagagacc--gcttcataaataaataaatagtaaaaaaaaa 745

                                                                       
Query: 59  taattttagaagctagagagatagctcagcagttaggagcactgactgttcttcaagagg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taattttagaagctagagagatagctcagcagttaggagcactgactgttcttcaagagg 685

                                                                       
Query: 119 acccaatttcaattcccaacacctacatggcagctcacaactgtctgtaactttagctcc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acccaatttcaattcccaacacctacatggcagctcacaactgtctgtaactttagctcc 625

                                                                       
Query: 179 acaccatctttctttgtaaggataaggaggatgtttcccagtctccagcagctcttctca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acaccatctttctttgtaaggataaggaggatgtttcccagtctccagcagctcttctca 565

                                                                       
Query: 239 gtgggagctttgtttatagtaggctcttgctagcctgacatactcagggaggaggggggt 298
           ||||||||||||   | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 gtgggagctttg--gaaagtaggctcttgctagcctgacatactcagggaggaggagggt 507

                                                                       
Query: 299 tggcagagaatatataacaacatcaagagttgagttgagaaggagggcagaaagggtcag 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tggcagagaatatataacaacatcaagagttgagttgagaaggagggcagaaagggtcag 447

                                                                       
Query: 359 catgacagtatctatctctctattggagttattgtgtcccagtactacattttgacattg 418
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 catgtcagtatctatctctctattggagttattgtgtcccagtactacattttgacattg 387

                                                                       
Query: 419 taaaaaggtgcgtgtgtgtgtatgcatacatgtatatgtatgtgcatgtgtgggcacact 478
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 taaaaaggtgtgtgtgtgtgtatgcatacatgtatatgtatgtgcatgtgtgggcacact 327

                
Query: 479 tgcca 483
           |||||
Sbjct: 326 tgcca 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 881
Length adjustment: 10
Effective length of query: 473
Effective length of database: 871
Effective search space:   411983
Effective search space used:   411983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information