BAC Information

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BAC

Clone NameMSMg01-401P20
Chromosome6 (Build37)
Map Location 126,740,544 - 126,968,669
singlet/doubletdoublet
Overlap geneLOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6
Upstream geneTmem16b, Ntf3, LOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1, Kcna6
Downstream geneFgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b, Prmt8, Tspan11, Tspan9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401P20.T7 (MSMg01no401_p20.b1)MSMg01-401P20.TJ (MSMg01no401_p20.g1)
ACCAG501244AG501245
length784760
length of high quality
(start - end)
108 (181 - 288)163 (83 - 245)
definitionCHROMAT_FILE: MSMg01no401_p20.b1 PHD_FILE: MSMg01no401_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:45 2005CHROMAT_FILE: MSMg01no401_p20.g1 PHD_FILE: MSMg01no401_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,740,544 - 126,740,651)(126,968,510 - 126,968,669)
sequence
CTTAGTCCTACTGTCACCCNNNGACNCCNATTTTCAGAGGAGCCGCGNGA
ATCAGCCACTTAGCTGAATGGGGCTGAGNGNGCAAACACAGTAAATTCAT
CTCCACGGTAGATTCTTAATTTGATAATATTTTTGGTGGGGGGCTGGGTG
GAGGAGGTCATCAGGGACGTCTTATTAGGGGTTGCATCTTGTCCCTGGTC
TCTTCCCCATCCCTCCTGTGGCTTGCACCCCAGCTAGCAACTTTGCTATG
ATGCTCTGCCTCACCGTAATCCCACAACAATGGAGACATGCATCCATGAA
CTGAAACCTTGAGCTGATTTTTTTCTTTTGGTCCTAAGTTGTTGGTCACA
GATGTTCTGCTGCTCCCCTGCCTAGCTGGGTAAACACCATCTATCATAAT
CCCCTCTCGCACAGACGACAGCTGGAGCCTATCTCTCAACAATTCCCTCA
CCCGAACCCCATACGCCCTCTCTCGATTCTCCTGTGATGTTGTCGCCCGC
CATGCATCTCTTTCCTCCCCTTTCCAATCTGATCTACACTCATCCCGCTT
TTTTCTATCGTTGCTTCGCTACGTTCTCTCTACTTCGCTCGCTACTTCGC
ATTCTTGTCTTACCTTCTGCCTCTTCCTTCTCCCCCTGTTTTTGTCCTCT
TCCTCCCGGGTACCTCCCCTTTTTCCTCCCTATTCTGATACTTCCCCTTC
CACTTCCTTCCCCCCCTTCTTTTTCCTCTCTCCTTTCTCATATCTACCCT
TTTTTCTCCCTTTCCTCCTTTTCCATTCTCCTTN
CTATGCAGTGGGAGGCCGGGNGGCCGCCTGGTTTCACACATGGGNGAACT
ATAGAAGGTTACCAAAAACTCCCTGNCTAGACACATCTTCTGCTGTTCTG
GAGGCTGGATTAATTTTACGCAGAACTGACTAGATTCCTTGTTCTCCATA
GGCCATACAGCCTGGTAGCGCCCACACCTACCTGAGCATAACAAACAAAC
CAAACAAACAAACAAAACATACACATACACACACACACACACNAAAAATT
TTTTAAAAAAAAAAAAAAAACAACCACCAAACCCTCAAAACCTAAAAACC
CCAGACCAAAAAAACATTACATAATATAAAACCAAAAACCCTGAACTCTG
AGCCGGACCGATTGACTGTCTTCATCCCAGCCCTCTGAGCCTCTGAAGCA
GGTCCTAAAATTCCATGCATCTAGCAGATTACAAAGTGATGGGTGCACAG
GAGCGCCCACAGAACGGTACTGGAGAAGCAATGGTTTTAGCTCACACCAT
AAGCCAACTTTGAGACACTTGCTCAAAAGGTTGGGAAGCAGACACCTGAC
TAGCTCACTTTAGCCTTTTCCAGATATCCTTTGCTGGGAGATTTCCCTGG
GGACCTAGAACTTGTCCCCGGTCAGCTCTTCCCTTTCTATCCCCCATTTT
GTTTCTTCTTTTGTCTGGAGGATCAGAACTCTACCTCCTCTTCTAGGGAA
TCTGAAGGTCCCTTTCTTTTTAGCCACTGGCCCTCCCCTGCTTTTGCCGC
CTAGGGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_p20.b1 MSMg01no401_p20.b1 CHROMAT_FILE:
MSMg01no401_p20.b1 PHD_FILE: MSMg01no401_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:45 2005
         (108 letters)



>mm_chr6_126740344_126740851
          Length = 508

 Score =  209 bits (108), Expect = 4e-59
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcatcttgtccctggtctcttccccatccctcctgtggcttgcaccccagctagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgcatcttgtccctggtctcttccccatccctcctgtggcttgcaccccagctagcaa 260

                                                           
Query: 61  ctttgctatgatgctctgcctcaccgtaatcccacaacaatggagaca 108
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgctatgatgctctgcctcaccgtaatcccacaacaatggagaca 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 508
Length adjustment: 8
Effective length of query: 100
Effective length of database: 500
Effective search space:    50000
Effective search space used:    50000
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no401_p20.g1 MSMg01no401_p20.g1 CHROMAT_FILE:
MSMg01no401_p20.g1 PHD_FILE: MSMg01no401_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:45 2005
         (163 letters)



>mm_chr6_126968363_126968925
          Length = 563

 Score =  248 bits (128), Expect = 2e-70
 Identities = 152/160 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatcttctgctgttctggaggctggattaattttacgcagaactgactagattccttgt 60
           ||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 307 acatcttctgctgttctggaggctggattaactttaggcagagctgactagattccttgt 248

                                                                       
Query: 61  tctccataggccatacagcctggtagcgcccacacctacctgagcataacaaacaaacca 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 247 tctccataggccatacagcctggtagcacccacacctacctgagcataacaaacaaacca 188

                                                   
Query: 121 aacaaacaaacaaaacatacacatacacacacacacacac 160
           | ||| ||||||||||| ||||| ||||||||||||||||
Sbjct: 187 accaaccaaacaaaacacacacacacacacacacacacac 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)