BAC Information

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BAC

Clone NameMSMg01-402B09
Chromosome6 (Build37)
Map Location 85,128,605 - 85,128,754
singlet/doubletsinglet
Overlap genenone
Upstream geneDysf, 4930504D19Rik, Cyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089
Downstream geneEmx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402B09.T7 (MSMg01no402_b09.b1)MSMg01-402B09.TJ (MSMg01no402_b09.g1)
ACCAG501317AG501318
length806770
length of high quality
(start - end)
150 (73 - 222)275 (74 - 348)
definitionCHROMAT_FILE: MSMg01no402_b09.b1 PHD_FILE: MSMg01no402_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:52 2005CHROMAT_FILE: MSMg01no402_b09.g1 PHD_FILE: MSMg01no402_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGGACTTTCCTGTTAGAGAAGCCTAAAAGATCCAGAAACTAAAA
ATGTAGTAACTGCTCCAAACTCCCAGACAAACACGTAGCAGTGGAAAACA
TTTGTAAACCAAATAATACTCACAGACAAAGTTCTAAGAAAGGGTGTGTG
GTTCATGCCTTTAATCCCAGCACTTCGGAGGTAGATGCAGGAGGATCTCC
AAATTAGAGGTCAGTCTGGCCTACAAAGTGAGTTCCAGGACAACCAGTGC
TACACAGAGAAACCCTGCCTTATTTCATAACTAAACAAAACTTAACAAAG
CTTAACACAACTATACATATCTAATTCTTTCCCACCCTAACAAAATTTAT
CCGCCTCTTAAGTAAGGCTTAAATGTTATGTGGGCTAGTGTTCACAATAC
TTACAGACATAATTTATCGTGATAAGCGGCTTTATCCCTTAAACCTATTG
ATTCATAATTTGTCAAATATCTCCCTTAAATCTAGAATTTAACAATGCCT
GGGACTTTTTATCCCACAGAATTAATATTTGGGTGTTCCAGAATTCTTAG
GGCTGTTGTGTTTTTTCCCCCTCCTACAATATTTTTTTTTAATATTACCG
GGACCTTTGTATTATTGTTTTTCCCCCCCCCCAATCCCCTCTTATAGGGG
CATCACCTTTATATTTTTCCGCTCTCCTATTATCTTCCTCCGTTGTTGTG
CCCTCTCCCGGTTTTACCTTATATTCTCTACTCCTCTCGACTTTAATTAT
AACTTT
AATATATTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCCTTGTTTTCCATTTGTT
AATAGGGTTATTTGGCTCTCTGGAGCCTAACTTCTTGAGTTCTTTCTATA
TATTGGATATTAGCCCTTTATCGGATGTACAATTGGTGAAAATCTTTCCC
CAATCTGTTGGTTACCATTTTGTCCTATTGACAGTGTCCTTTGCTTTACA
GAAGCTTTACAGTTTTATAAGGTCCCTTTTGTCAATTCTTGATCTTAAAG
CATAAGTCATTGGTGTTCTGTTCAGGAACTTTTCCCCTGTGACCATGTGT
TCGAGGCTTTTCCCCACTTCCTCTTCTATTAGATCAGCGTGTTTGGTTTT
AATGTATAGGCCCTTGATCCACTTGCACTTGAGCTTTGTACAGGGAGATA
AGAATGTATCAATATGCATTCTTCTACTTGTTGAACCATCACTATTTGTT
GAAAATGCTATCTTTTTCCACTGGATGGATTTATCTCCTTTGTCCAAGAT
CAAGTGATCATACTTGTGTGGGTTCATTTCTGGGTCTTCTATTTTTACCC
CATTGATCCTCTCGCCTTGTCACTGCATCTATACCCAGTATGTTTTTCAT
CCGCTATTGTCTCTGCTCTTACTTCCTGGAGGTTCTCTATAGGCTGATAT
CCTCCCTGAAGGTCCTATTTATTGGTTGGAAAATATGTTTTTTGCCCTTC
CCATCCTTTTTTTTGATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_b09.b1 MSMg01no402_b09.b1 CHROMAT_FILE:
MSMg01no402_b09.b1 PHD_FILE: MSMg01no402_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:52 2005
         (150 letters)



>mm_chr6_85128405_85128954
          Length = 550

 Score =  282 bits (146), Expect = 5e-81
 Identities = 149/150 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagcctaaaagatccagaaactaaaaatgtagtaactgctccaaactcccagacaaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 350 agaagcctaaaagatccagaaactaaaaatgtagtaactgctccaaacccccagacaaac 291

                                                                       
Query: 61  acgtagcagtggaaaacatttgtaaaccaaataatactcacagacaaagttctaagaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 acgtagcagtggaaaacatttgtaaaccaaataatactcacagacaaagttctaagaaag 231

                                         
Query: 121 ggtgtgtggttcatgcctttaatcccagca 150
           ||||||||||||||||||||||||||||||
Sbjct: 230 ggtgtgtggttcatgcctttaatcccagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 550
Length adjustment: 8
Effective length of query: 142
Effective length of database: 542
Effective search space:    76964
Effective search space used:    76964
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)