Query= MSMg01no402_g19.b1 MSMg01no402_g19.b1 CHROMAT_FILE:
MSMg01no402_g19.b1 PHD_FILE: MSMg01no402_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:18 2005
(512 letters)
>mm_chr6_15874272_15875183
Length = 912
Score = 893 bits (462), Expect = 0.0
Identities = 477/482 (98%)
Strand = Plus / Minus
Query: 31 aagcctttcatgaatagttgaagtggtcagtaaagtgttcaggagagaagtgtggtggat 90
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aagcctttcatgagtagttgaagtggtcagtaaagtgttcaggagagaagtgtggtggat 653
Query: 91 agagatggcaaacaagatgaagctaagggtggccatggggacaccagagacagagaaagg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agagatggcaaacaagatgaagctaagggtggccatggggacaccagagacagagaaagg 593
Query: 151 ggactcagtccaggagtacccactgatagtagggatgcagcgtgaggggttctctgtttc 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ggactcagtccaggagtacccactgatagtagggatgcagcgtgaggggttctctgtttc 533
Query: 211 cccaaagctccagatgaaatctgcaggaatagctagacagtggacacatgactgtcattc 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cccaaagctccagatgaaatctgcaggaatagctagacagtggacacatgactgtcattc 473
Query: 271 atatcattcccaccacaaagcaaagtagaagtagcaaagagaagcaaatagagaaataaa 330
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atatcattcccaccgcaaagcaaagtagaagtagcaaagagaagcaaatagagaaataaa 413
Query: 331 tcagactaaaaaaaatgaagtagaatcaaaaccagattgtatgagtttacagttttgttt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tcagactaaaaaaaatgaagtagaatcaaaaccagattgtatgagtttacagttttgttt 353
Query: 391 aggaaggtctccagttgtcatctgggcatagcgtttgttagttcttttgaggttcataca 450
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 352 aggaaggtctccggttgtcatctgggcatagcgtttgttagttcttttgaggttcaaaca 293
Query: 451 ataaacagaatgggtctctttgactcatgtgtatttttagaaatcagacgtttcatatgc 510
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 292 ataaacagaatgggtctctttgactcatgtgtatttttagaaatcagacatttcatatgc 233
Query: 511 ta 512
||
Sbjct: 232 ta 231
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no402_g19.g1 MSMg01no402_g19.g1 CHROMAT_FILE:
MSMg01no402_g19.g1 PHD_FILE: MSMg01no402_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:18 2005
(468 letters)
>mm_chr6_15725828_15726695
Length = 868
Score = 816 bits (422), Expect = 0.0
Identities = 461/482 (95%), Gaps = 14/482 (2%)
Strand = Plus / Plus
Query: 1 tctggacctgcggatggattaaaacccaatctctttggtcttttcttctgttgcccttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tctggacctgcggatggattaaaacccaatctctttggtcttttcttctgttgcccttct 246
Query: 61 ttaaattgtcctatgagattctgactctgtgatcgtctctttgctccttttaaggctctt 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 247 ttaaattgtcctatgagattctgactctgtgatcttctctttgctccttttaaggctctt 306
Query: 121 cctcttccttcttttctgtgcattttcctgggcattcatgctggtgttttgtttgtttgt 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 307 cctcttccttcttttctgtgcattttcctggacattcatgctggtgttttgtttgtttgt 366
Query: 181 tttgttttgttgctttgtttttaataatatactagagagttgagtatcctcttgacaaca 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttgttttgttgttttgtttttaataatatactagagagttgagtatcctcttgacaaca 426
Query: 241 acaagtcctccaggaaacttctgccagccttaccagtttatt--attattattattatta 298
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 427 acaagtcctccaggaaacttctgccagccttaccagtttattttattattattattatta 486
Query: 299 ttattattattattattacaattgctattattatt------------ttattttattctg 346
|||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct: 487 ttattattattattattattattattattattattacaattgctattttattttattctg 546
Query: 347 tatagttttagatgacttacacatccaaaatttagaagcaaggtgtaaagtgtcaacatt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tatagttttagatgacttacacatccaaaatttagaagcaaggtgtaaagtgtcaacatt 606
Query: 407 taggttaagttactcagtctaaattttataacactttaaaagctttgtttttccccacga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 taggttaagttactcagtctaaattttataacactttaaaagctttgtttttccccacga 666
Query: 467 ga 468
||
Sbjct: 667 ga 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
