Query= MSMg01no402_l24.b1 MSMg01no402_l24.b1 CHROMAT_FILE:
MSMg01no402_l24.b1 PHD_FILE: MSMg01no402_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:45 2005
(506 letters)
>mm_chr6_50885291_50886196
Length = 906
Score = 930 bits (481), Expect = 0.0
Identities = 495/500 (99%)
Strand = Plus / Minus
Query: 7 gaattcccctgtgtgcactcaccaacctaaatgttgcctagggagccctttcaaatgcta 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gaattcccctgtgtgcactcaccaacctaaatgttgcctagggagccctttcaaatgcta 647
Query: 67 ctggtggggacaaaggctttctgctaatctcttacaaacagagaagtgtttctgtctcat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ctggtggggacaaaggctttctgctaatctcttacaaacagagaagtgtttctgtctcat 587
Query: 127 ctgtttgctgcatggttttatgtgtgtcgtgctggtgaaggggtaccgagacaagtgctt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 586 ctgtttgctgcatggttttatgtgtgtcgtgctggtgaaggggtaccgagacaagtggtt 527
Query: 187 atgtgacccccctgaaagccatagctacaaaaaggtgcgaacttgaataatcacgaagct 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 atgtgacccccctgaaagccatagctacaaaaaggtgcgaacttgaataatcacgaagct 467
Query: 247 aatgtcatctgagagggcttggtggaactgtgtagagttactctaagccctgctgtaccc 306
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 466 aatgtcatctgagagggcttggtagaactgtggagagttactctaagccctgctgtaccc 407
Query: 307 acagatgatgcggcaagcacagcctggctctctctggtcatgagatggcaggttgcgtgg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 acagatgatgcggcaagcacagcctggctctctctggtcatgagatggcaggttgcgtgg 347
Query: 367 aggcaggagatgctaattgactggtgggctatttagagttaggaggctgaggtggtggga 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aggcaggagatgctaattgactggtgggctatttagagttaggaggctgaggtggtgggc 287
Query: 427 cagggacagaaggtgagggatgctgcctaggtcacaaactcaatcattganaggcccctg 486
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 286 cagggacagaaggtgagggatgctgcctaggtcacaaactcaatcattgaaaggcccctg 227
Query: 487 taatgcaagctggagcccac 506
||||||||||||||||||||
Sbjct: 226 taatgcaagctggagcccac 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no402_l24.g1 MSMg01no402_l24.g1 CHROMAT_FILE:
MSMg01no402_l24.g1 PHD_FILE: MSMg01no402_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:45 2005
(453 letters)
>mm_chr6_50711144_50711996
Length = 853
Score = 768 bits (397), Expect = 0.0
Identities = 433/445 (97%), Gaps = 2/445 (0%)
Strand = Plus / Plus
Query: 1 caggttcagagagaaacactgtctcaaaaaactaagatgaagagtgattgaggaagatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggttcagagagaaacactgtctcaaaaaactaagatgaagagtgattgaggaagatac 260
Query: 61 ccaatgtcaacctctgacctccgcatgcgtgcacacacacggtgcacatgcaccttcaac 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 261 ccaatgtcaacctctgacctccgtatgcgtgcacacacacggtgcacatgcaccttcagc 320
Query: 121 ctttcacacacatgtgaacacacacaataaacaaatgcagtggaagtctgcatgcacatg 180
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 321 ctttcacacacatgtgaatgcacacaacaaacaaatgcactggaagtctgcatgcacatg 380
Query: 181 tcttttgatatcatcaagccagtgcaccattgaaagctatagcctgcttatttattcggg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tcttttgatatcatcaagccagtgcaccattgaaagctatagcctgcttatttatttggg 440
Query: 241 acttatattaatttactgtgatgtgagatttcagtattattcagcctttatatgatgtaa 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttataataatttactgtgatgtgagatttcagtattattcagcctttatatgatgtaa 500
Query: 301 gaggtaataattaaaattttagaggatagttatcatggttaaagctagtcacagtgtct- 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggtaataattaaaattttagaggatagttatcatggttaaagctagtcacagtgtctc 560
Query: 360 tgaagtaaggaaggactttaggacagaagtgacagtaaagaacttccccacaactttgta 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 t-aagtaaggaaggactttaggacagaagtgacagtaaagaacttccccacaactttgta 619
Query: 420 ttattacaaagcagttaagctatta 444
|||||| |||||| |||||||||||
Sbjct: 620 ttattataaagcaattaagctatta 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
