BAC Information

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BAC

Clone NameMSMg01-403I14
Chromosome6 (Build37)
Map Location 75,860,318 - 75,860,728
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
Downstream geneEG546907, LOC100042952, LOC668153, EG668155, LOC100042956, Ctnna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403I14.T7 (MSMg01no403_i14.b1)MSMg01-403I14.TJ (MSMg01no403_i14.g1)
ACCAG502424AG502425
length842730
length of high quality
(start - end)
211 (46 - 256)412 (77 - 488)
definitionCHROMAT_FILE: MSMg01no403_i14.b1 PHD_FILE: MSMg01no403_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:51 2005CHROMAT_FILE: MSMg01no403_i14.g1 PHD_FILE: MSMg01no403_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCCTACTCTGCTTTAAATTGATCTTAAGAGCTACCTGGTCATGTT
CATCTTGGTGAATTGTAGACCCCTCCATGCTGGACTTTTGCAGGATAAAA
CAATCTGCTTCTGTATACTATTTGAGTCTGGTGTATAGTTCAGTGACTCA
TTGGCCCCCCTATTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGCCTCCCTCCCCCTTTTTTTCTTCCCCCCTCTCTTTCCTTTCTTTTCT
TCCCCCTTTTTTTTTTTTTCCCCTCTTTTTTCCCCTCCTTTCCCCCTTTC
TCTTTCTTTCCCCTTCCCCCCCCCCTTTTTCTCCCTCTTCTCCTTTTTTC
TTCCTTTCCCCCTCCTCCTCTTTTCTTTTTTTCCCCCTTCCCCTCTTTCC
CCTCCTTTTTCTCCTTTTTTCCTTTCCCCCCTTTTCCCCTTTTTTCTCTC
CCTCTTTTTTTTTCCTTTCTTTCCCTTCCCCTCTTTTTTCCTTTCCCTTT
CCCTTTTTTTTTTTTTCCCCCCCTCCCCTTCCCTTTCTTTTTTTTCTTTT
CCCCCCCCCTCTCTTCTTTTTTCCCCTCTCTCTTCCTTTTTCCCTATTCT
CCCCTTTTTTTTTTATCTCCCACCCTCTACTTTTTTTTTTTTTCCTCCTC
TCCCCCCCCCTCTTCACCTCCCCTTTTCTTTTTTTTCTCTTTCCTTCTTT
CCCCCCTATTTCTCTTCTTTTATCCCTATCCCCCATTTATTTATCTCCCT
ACCTCTCCTCCTTTTCATTTTCCCCCTTTTTCTCGCTTTCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAATGAAACTATATTTAGTTG
TACACTGTGTGAGGAAACACTAATAAGAAAGATATTCTAACTTTGTGGAC
TGTTTGTGTTGATAAATTTGATTCCTTTTACATCTGTGGAACATATTTGC
CTCCCCTTTTCAATTTTGCTGCAACTATTCACCAACATTGTGTCAGCCAA
ATCATGTCTTGCTGTATGATCCACACTACAATACAAAAAAAAAAAAAAAA
AAAGGCAATTGCTGATGGTTTGACACTACAAAAGACTGACCTTTATCTGA
CATAATTGGTAACTATTACCAGTTATGTCTCTTATTATTTTCTTATTTTA
TTATAAGATAATAAAATATGCACAATCATTTGTAGGGAGGACGAAAACTT
TAGTTGACTGGTTTTTGTTGTAGTTGTTTGTTTGTGTGTTTTTAGACAAA
GAATTATATGGATTTACCTGATTCATACAACGAGTTCCAGAGAATCTAAT
TCTCTATGGAAGAAAGATATGCGCCAATTCTTCGAAGGACCGGATTTATG
ACCTACTTGATTCTGTTTCCATACCCTTTCCAGAACCCTTATTTTCTGCT
TTCCCACCCCTTTGTCCCGCCTTTTATTTCGTTCCCCTTTTTACTCTCCC
CCTCTTTTCTATCTCCTTTCTTTTTTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_i14.g1 MSMg01no403_i14.g1 CHROMAT_FILE:
MSMg01no403_i14.g1 PHD_FILE: MSMg01no403_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:52 2005
         (412 letters)



>mm_chr6_75860118_75860928
          Length = 811

 Score =  774 bits (400), Expect = 0.0
 Identities = 409/412 (99%), Gaps = 1/412 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaaatgaaactatatttagttgtacactgtgtgaggaaacactaataagaaagatatt 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaaatgaaactgtatttagttgtacactgtgtgaggaaacactaataagaaagatatt 260

                                                                       
Query: 61  ctaactttgtggactgtttgtgttgataaatttgattccttttacatctgtggaacatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaactttgtggactgtttgtgttgataaatttgattccttttacatctgtggaacatat 320

                                                                       
Query: 121 ttgcctccccttttcaattttgctgcaactattcaccaacattgtgtcagccaaatcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcctccccttttcaattttgctgcaactattcaccaacattgtgtcagccaaatcatg 380

                                                                       
Query: 181 tcttgctgtatgatccacactacaatacaaaaaaaaaaaaaaaaaaaggcaattgctgat 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tcttgctgtatgatccacactacaatacaaaaaaaaaaaaaaaaaa-ggcaattgctgat 439

                                                                       
Query: 241 ggtttgacactacaaaagactgacctttatctgacataattggtaactattaccagttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggtttgacactacaaaagactgacctttatctgacataattggtaactattaccagttat 499

                                                                       
Query: 301 gtctcttattattttcttattttattataagataataaaatatgcacaatcatttgtagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtctcttattattttcttattttattataagataataaaatatgcacaatcatttgtagg 559

                                                               
Query: 361 gaggacgaaaactttagttgactggtttttgttgtagttgtttgtttgtgtg 412
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaggatgaaaactttagttgactggtttttgttgtagttgtttgtttgtgtg 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 811
Length adjustment: 9
Effective length of query: 403
Effective length of database: 802
Effective search space:   323206
Effective search space used:   323206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)