Query= MSMg01no404_a03.b1 MSMg01no404_a03.b1 CHROMAT_FILE:
MSMg01no404_a03.b1 PHD_FILE: MSMg01no404_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:30 2005
(530 letters)
>mm_chr6_122538196_122539125
Length = 930
Score = 986 bits (510), Expect = 0.0
Identities = 525/530 (99%)
Strand = Plus / Minus
Query: 1 gttataaagtattattcaccatacctatcattatggctgtaagaaaggagatgtagcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 565 gttataaagtattattcaccatacctatcattatggctgtaagaaaggagatgtagcatg 506
Query: 61 tatggactgagggtctctctggctttttagaaaactaagcctggaaacagactctaatcc 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatggactgagggtctctctggttttttagaaaactaagcctggaaacagactctaatcc 446
Query: 121 tggatacggtgtgtctagcttgtacattaccccaaaacaaactttaaaaaaatagaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggatacggtgtgtctagcttgtacattaccccaaaacaaactttaaaaaaatagaggag 386
Query: 181 aaaataggatatgattgcagtaggctaacgtgcacccagtcatcactgagttactctgca 240
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 385 aaaataggatatgattgcagtaggctaaagtgcacccagtcatcactgaattactctgca 326
Query: 241 ttgccagctaacatgtataatgagattcaggagtaagatatgtataatctacatttggta 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgccagctaacatgtagaatgagattcaggagtaagatatgtataatctacatttggta 266
Query: 301 gtttccaaattgtacctctcagatcctttgagaagtcatcttcccattagatttagatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtttccaaattgtacctctcagatcctttgagaagtcatcttcccattagatttagatta 206
Query: 361 aaacagtttttttgaggtcagatctcaaaagtatagcctaggcagaacttgaacttgagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaacagtttttttgaggtcagatctcaaaagtatagcctaggcagaacttgaacttgagt 146
Query: 421 ttcctcatgccagagagtctagtatgctgggatggagccgtgccccactgtttttccgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ttcctcatgccagagagtctagtatgctgggatggagccgtgccccactgtttttccgta 86
Query: 481 tgatttgtagacttgggagagtagaacatgatttcaaggcagctcaatgt 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 tgatttgtagacttgggagagtagaacatgatttcaaggcagctcaatgt 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_a03.g1 MSMg01no404_a03.g1 CHROMAT_FILE:
MSMg01no404_a03.g1 PHD_FILE: MSMg01no404_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:30 2005
(435 letters)
>mm_chr6_122391111_122391945
Length = 835
Score = 737 bits (381), Expect = 0.0
Identities = 421/439 (95%), Gaps = 11/439 (2%)
Strand = Plus / Plus
Query: 1 attcttcgaatgcatctaaaaataacaagatgtagcaaaaagggagttctcttaacacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttcgaatgcatctaaaaataacaagatgtagcaaaaagggagttctcttaacacag 260
Query: 61 aaccagtactctctctatagatagctacacccaagtaatttataatagaagcaaatatgg 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 261 aaccagtactctctctatagatagctacacccaagtaaattataatagaagcaaatgtgg 320
Query: 121 actatcaaatgctattttaaatgttgagagagggctggagaggaggctcagcagttaaga 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 actatcaaatgctattttaaatgttgagagatggctggagaggaggctcagcagttaaga 380
Query: 181 tgactgttgttccagaggtcctgagttcaattcccagcaaccatatggtagctcacaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgactgttgttccagaggtcctgagttcaattcccagcaaccatatggtagctcacaacc 440
Query: 241 atctgtagtgggatccttt--cgcccttttctggtggatctgaagatagctacagtgtac 298
|||||||||||||||| |||||| |||||||||||| |||||||||||||||||||
Sbjct: 441 atctgtagtgggatcc---aacgccctcttctggtggatccgaagatagctacagtgtac 497
Query: 299 tcacaaaacataaaacaaat----ctttcaacaaattaaaaataaaaataaatacaatgt 354
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 498 tcacaaaacataaaacaaataaatctttctacaaattaaaaataaaaataaatacaatgt 557
Query: 355 tgagagagagag--cagtatgattgcttgtatgacaaaacatcaggatacaagctacaga 412
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgagagagagagagcagtatgattgcttgtatgacaaaacatcaggatacaagctacaga 617
Query: 413 acactgcttctgtagtgac 431
|||||||||||||| ||||
Sbjct: 618 acactgcttctgtaatgac 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
