BAC Information

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BAC

Clone NameMSMg01-404B23
Chromosome6 (Build37)
Map Location 104,931,918 - 104,932,300
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn6
Downstream geneLOC384470, LOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404B23.T7 (MSMg01no404_b23.b1)MSMg01-404B23.TJ (MSMg01no404_b23.g1)
ACCAG502870AG502871
length776762
length of high quality
(start - end)		500 (34 - 533)383 (63 - 445)
definitionCHROMAT_FILE: MSMg01no404_b23.b1 PHD_FILE: MSMg01no404_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:40 2005CHROMAT_FILE: MSMg01no404_b23.g1 PHD_FILE: MSMg01no404_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCATGGA
TCTTGAAGGAGAATCTACAATCATCTATTTACTAAAACAGCATATTTGTT
AACTACACATTCAAAATGTTTGTCCTTATATACACAAAGAAGTATAGTCC
TTATACCTAAACATGAAAAGTTCTCTTTGCAAAAGAAAGAAAACTAGGAA
TTTCATAAATTCATTCTTTTTAATAGTTGAGTAGTACTCCATTGTGTAAA
TGTACCACATTTTTTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCT
TTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATGGTGGAGCA
TGTGTCCTTCTTACCGGTTGGGACATCTTCTGGATATATGCCCAGGAGAG
GTATTGTGGGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACTGC
CAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAATG
GAGGAGTTTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTG
AATTTTTGATCTTAGCTATTCTGACTGGTGTGAGATGGAATCCAGGGTTG
TTTTGATTTGCATTTCCCTGACGGATAAAGAAGTTGACCCGGAGGGCATC
TCCTGAGGGGGGGAACCCATCCCCCAGAACTCCAAGAAAGGGCCTCCCCG
GAAAGTGGAATTTACCCCCAAACCTATATTTCGGGGTTTATGGGCCAGAA
GGGAAACACTGATATGGAGAAAAACA

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXACAGTTCAGTTTTCTGAGGTTAACGATGGAGGAGTAAG
GACCTGAAAGATGAAGAGTCTAGAAGAAGAAACTTAGTGAGAGCTCTGAG
GTCTTGGTCAAGATCATTGAACACGCCTGTGTTCTGTTCACCCATGGTTG
ATTCTCACATTCATGGGATTTGGGTATGCAGGAAATTTGCTTGTCTGGAT
TTGGGGTTTATATGTTTATTTATTCATGTTTTAAAAGTTCTTTCAAATAA
TGTAGCACTTGACTGAAACCTATCAAGATATGTAATTTTCATAACTCAGT
AGAAAATATATTCAAAAATTCAAATTTATTGGGTAAAATTGCTTTAGCTT
AATAAACACTTTAGGAATTGACTTTGTTCAATTCCTTCCTGAGAGTTCTT
TAAACATTATATCCCCACAGGAAATTTTCTAGTTTGTCCCCTTAAGTGCT
TTAGTGATAAAATATTTCTTCAGGTAGTAGAGATAGGTATCTGAATGGCC
AAAATAGAACTTATAACACCCATCTAGAGGGGACAATTTAATTAGAATCT
ACTGGTCCTGATTCTCAAGGGGCCATGAAAAACTGGGAATTTTAAGTTTC
CTTCTGGACTCCTGGTATAGAAAATGGTGGATCCGGGCTAGGGAGACAAG
AAGCCCTTCCCATAATGTGGAATAATTATTATTTTTATCTCCCCCCTTCT
CTTCTTCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_b23.g1 MSMg01no404_b23.g1 CHROMAT_FILE:
MSMg01no404_b23.g1 PHD_FILE: MSMg01no404_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:40 2005
         (383 letters)



>mm_chr6_104931718_104932500
          Length = 783

 Score =  694 bits (359), Expect = 0.0
 Identities = 377/383 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagttcagttttctgaggttaacgatggaggagtaaggacctgaaagatgaagagtcta 60
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 201 acagttcagttttctgaggttaacgatggaggagtaaggagctcaaagatgaagagtcta 260

                                                                       
Query: 61  gaagaagaaacttagtgagagctctgaggtcttggtcaagatcattgaacacgcctgtgt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagaaaaaacttagtgagagctctgaggtcttggtcaagatcattgaacacgcctgtgt 320

                                                                       
Query: 121 tctgttcacccatggttgattctcacattcatgggatttgggtatgcaggaaatttgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgttcacccatggttgattctcacattcatgggatttgggtatgcaggaaatttgctt 380

                                                                       
Query: 181 gtctggatttggggtttatatgtttatttattcatgttttaaaagttctttcaaataatg 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gtctggatttggggtttatatgtttatttattcatgttctaaaagttctttcaaataatg 440

                                                                       
Query: 241 tagcacttgactgaaacctatcaagatatgtaattttcataactcagtagaaaatatatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagcacttgactgaaacctatcaagatatgtaattttcataactcagtagaaaatatatt 500

                                                                       
Query: 301 caaaaattcaaatttattgggtaaaattgctttagcttaataaacactttaggaattgac 360
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 caaaaattcaaatgtattgggtaaaattgctttagcttaataaacactttgggaattgac 560

                                  
Query: 361 tttgttcaattccttcctgagag 383
           |||||||||||||||||||||||
Sbjct: 561 tttgttcaattccttcctgagag 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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