BAC Information

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BAC

Clone NameMSMg01-404C03
Chromosome6 (Build37)
Map Location 114,598,969 - 114,599,214
singlet/doubletsinglet
Overlap geneAtg7
Upstream geneIrak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491, Slc6a1, Hrh1
Downstream geneVgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404C03.T7 (MSMg01no404_c03.b1)MSMg01-404C03.TJ (MSMg01no404_c03.g1)
ACCAG502878AG502879
length737828
length of high quality
(start - end)
246 (69 - 314)174 (66 - 239)
definitionCHROMAT_FILE: MSMg01no404_c03.b1 PHD_FILE: MSMg01no404_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:41 2005CHROMAT_FILE: MSMg01no404_c03.g1 PHD_FILE: MSMg01no404_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGCACGCTATACGACTCACTATTTCCAGAATATCCGCGGAATTCTGGG
GTTTCGCAAAAAAACACCCAGGACTACACAGTGAGCCTTCAGACTCTGGG
AGAGGGAGGTGAAATCAGGACGAGGAAGAGGAAGGCATCAGTGGGTTTCA
CTTCCCTGGGTAAAGATGGAAAACGAGGCCAACTGACTCTAAGTCTAACC
TCAGAGAAGGCAGGTATAACCAGAGCCCTTAAGCAAAAAACTTAGCCCCC
AACATGAGTCTTGTCGTCTTCCTCTTCTGAGCCAGGCCAGCAAAACCTAC
CTCCTTTCTCAAAAATCTTACTGCCTTCTCTGGTAGCCAGTGATCTGACC
AGCTGTTGTCCTCTGTCTCCTGGATTACTGCCACAGAATCCTGACAAGTC
CTCAGGTTGACCTGCCTTGTGCAGTGACTTATAGATGACTGCATACTCCC
TCCTTGCTCAAACTTCCTCAGCTCTCCACTTCCTACTCCTGCGTTTTCAT
AGTATAAGTCCATGATTCAGCAGGTAACAGCGCCTGCCCGATTTGCCTTG
ACCTCCTTTGTTTGATTCCCCATGATTTTGTAATTACTGAATTGACTTCG
GTTGGTTTTTCCCTAGAAATTTCGTTGTATATTTCTACAATGTATATGTA
TTGTTCTCTTAACTCCCCAGACTGCTATTATACATTATACGTTAATTTTC
TCTGTTTTTTTTTCCCTTCCCCCTTTTTTCTTTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTGATTGGATGGGAGATGGGAAAAGATAAGGGAAA
TTGGGTCCACGAATCCTTGCTCTTCTTGGGACAATGGCTGTGCTCCCTGG
AGCTGTGCTGAAGTCACCTCTGGCAAGACAAACCTGGAAAGTGAGCTCGA
AATTGCATCCTAGCGGTGTGCATCCCTATATTTCTCGGCCAGCCGGTACC
AGAGAACTGGGTGCTGACAGTTGTCCTCTTGTTCCCAGAGTACCAGACTA
TGTGTATCGCCTGACCTCTCTCTACCGGATACACCTTCCTACTGCACATT
GTGTCCCGTTCCATATTTCCCATATTATGTACTCTTTAATTTCATTCTAT
CACTCTATCAATACCTACTTTATTCGCTCTTTTCTCATCCCCCGTCGTTG
TTCCCTTTTTTATGTTGTTCTCTTTCCATTTTGTTTTTTTTTTTCTCCCT
CTCTCTCTCCCCCCTTTATTCTTTTTCTTCCCCTTTTTTATTATTTTATT
AATATACCTCCACAACTAATCCATCTTATTTTATCTTCACATCTCTTTCC
CTTCTCTTTTATTCTCCCCCCTCTCCTCTAATTTCTTTCTCCACCTCCCC
TCTTTTTTCTATTTCTTTTTTTTATCCCCCCCTCTCTTCTTATTTTCTCC
CCTCTCTCTTTATTTATATTCCTTTTTCTTATTTCCCTTTCTTTAATTTT
CCCTTTTTCCCCCCTGCTTCCTTTTTCTCTACTTACCTTTCTTTATTCTC
CCCCCCTCCTTATTTTTTTTTTTTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_c03.b1 MSMg01no404_c03.b1 CHROMAT_FILE:
MSMg01no404_c03.b1 PHD_FILE: MSMg01no404_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:41 2005
         (246 letters)



>mm_chr6_114598769_114599414
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggactacacagtgagccttcagactctgggagagggaggtgaaatcaggacgaggaag 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 446 caggactacacagtgagccttcagactctgggagagggaggggaaatcaggacgaggaag 387

                                                                       
Query: 61  aggaaggcatcagtgggtttcacttccctgggtaaagatggaaaacgaggccaactgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aggaaggcatcagtgggtttcacttccctgggtaaagatggaaaacgaggccaactgact 327

                                                                       
Query: 121 ctaagtctaacctcagagaaggcaggtataaccagagcccttaagcaaaaaacttagccc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 326 ctaagtctaacctcagagaaggcagatataaccagagcccttaagcaaaaaacttagccc 267

                                                                       
Query: 181 ccaacatgagtcttgtcgtcttcctcttctgagccaggccagcaaaacctacctcctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccaacatgagtcttgtcgtcttcctcttctgagccaggccagcaaaacctacctcctttc 207

                 
Query: 241 tcaaaa 246
           ||||||
Sbjct: 206 tcaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)