XXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGCATCCGCGGAATTCTCTGA
GNTTTACAACAACCTGCTCTATATAGAGAGTGCTAGTACAGTTGGATTTA
CACAGAGAAGTCCTGTCTCAAGACACATAATAAACGAAAAAGTAAAATAA
ACAACTTGACTCATTTGAATAAATTTATAATAAATAAATTTATGTGAAAC
AAAACAAAACAACAGCAACAACAAAAAGATGTCCAAGTAGAGAAAGCAGT
TCAGAGCAAAAATAGCATAGCTTGAGCCACCATATTACTCAGTTTCAAAT
GTACTGCTGTGTCTTATTCTCTAAAATAGACTGGTGATGTAAAAGTTCAA
AACCTATAAAGCAACAGGACAGGACACAGGACTAGGGGAAAATGCTCCAA
ATTTACTATTGGTCATTGTAAAAGTTTCAATTACTCACAATGGGAAAACC
AGGTAAATTTTTTTAAATAAATGATTTCAGGAAGACATGACATTGCGTAT
GGAATCATGAAACTGGCATGAATGAAGATAGACGTGACAATTAGATGACC
TGGAGTGGTGTGTGATTCCTGCTGAATTAACACCAATACAAGTATGGCTT
CTGACAGATACCAATGATTTTATAGGTTCACTGTGAGCTATGATTATCAA
AGCTATCGGTTCGTTGGGGGTGGCACCTACTATTGAATGAGTTATTTATT
TTGCACCTTGTGTGTCCTTAAACCTCCCCTTTTTTAATCCTGGAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTAATAAAATCTAAGTGAGATTATTAAGGTGTGCCC
TCATTCACAAACACGAGGAAACAGGACAGACAAGAGGAGAACTCTGTCAA
GACTGATGGAGAAGGCTGCCATTCACAAGCTAAAGCATCTAGGCATCAGA
AAATACTAGCCTTGCAAACACTTTATGGATTGTTCAAACTCTCAGTGTCC
AGAACTGTGGGAAAATAAGTATGTATTGACATACTATAACTATATCTCTA
TATCTCTATATCATCTCTATATCTCTATATCATCTCTATATCTCTATATC
ATCTCTATATCTCTATATCTATCTCTATATCTCTATATCTATCTCTATAT
CTCTATATCATCTCTATATCTCTATATCTCTATATCTCTATCTATCTCTA
TATCTCTATATCATCTCTATATCTCTATATCTATCTCTATATCTCTATCT
CTATTTCTCTCTATCTCTCTATTTCTCTATCTCTATCTCTTTATATCTCT
ATATCTATCTCTATATCTATCTTATCTCTCTATCTCTCTATCTCTATCTC
TTTATATCTCTATATCTATCTCTATATCTATCTCTATATCTACTCCATAT
CTATCTCTATCTCTGTATCTATCTCTATATCTCTATATCTCATCTCTATA
TCTGAATATCTGGATATCTGGATATCTGCATATCTGTATN

Query= MSMg01no404_i03.b1 MSMg01no404_i03.b1 CHROMAT_FILE:
MSMg01no404_i03.b1 PHD_FILE: MSMg01no404_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:12 2005
         (557 letters)



>mm_chr6_14447057_14448012
          Length = 956

 Score =  992 bits (513), Expect = 0.0
 Identities = 546/557 (98%), Gaps = 1/557 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgctctatatagagagtgctagtacagttggatttacacagagaagtcctgtctcaag 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgctctatatagagagtgctagcacagttggatttacacagagaagtcctgtctcaag 260

                                                                       
Query: 61  acacataataaacgaaaaagtaaaataaacaacttgactcatttgaataaatttataata 120
           ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 acacataataaactaaaaagtaaaataaacaacttgactcatttgaataaatgtataata 320

                                                                       
Query: 121 aataaatttatgtgaaacaaaacaaaacaacagcaacaacaaaaagatgtccaagtagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataaatttatgtgaaacaaaacaaaacaacagcaacaacaaaaagatgtccaagtagag 380

                                                                       
Query: 181 aaagcagttcagagcaaaaatagcatagcttgagccaccatattactcagtttcaaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagcagttcagagcaaaaatagcatagcttgagccaccatattactcagtttcaaatgt 440

                                                                       
Query: 241 actgctgtgtcttattctctaaaatagactggtgatgtaaaagttcaaaacctataaagc 300
           |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 actgctgtgtcttagtcactaaaatagactggtgaagtaaaagttcaaaacctataaagc 500

                                                                       
Query: 301 aacaggacaggacacaggactaggggaaaatgctccaaatttactattggtcattgtaaa 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaggacaggacacaggactagggaaaaatgctccaaatttactattggtcattgtaaa 560

                                                                       
Query: 361 agtttcaattactcacaatgggaaaaccaggtaaatttttttaaataaatgatttcagga 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 agtttcaattactcacaatgggaaaaccaggtaaatttttt-aaataaatgatttcagga 619

                                                                       
Query: 421 agacatgacattgcgtatggaatcatgaaactggcatgaatgaagatagacgtgacaatt 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agacatgacattgcatatggaatcatgaaactggcatgaatgaagatagacgtgacaatt 679

                                                                       
Query: 481 agatgacctggagtggtgtgtgattcctgctgaattaacaccaatacaagtatggcttct 540
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 680 agatgacctggagtggtgtgtgattcctgctgaattaacaccaatacacgtatggcttct 739

                            
Query: 541 gacagataccaatgatt 557
           ||||||||| |||||||
Sbjct: 740 gacagatacaaatgatt 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 956
Length adjustment: 10
Effective length of query: 547
Effective length of database: 946
Effective search space:   517462
Effective search space used:   517462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)