BAC Information

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BAC

Clone NameMSMg01-404K14
Chromosome6 (Build37)
Map Location 121,571,529 - 121,724,008
singlet/doubletdoublet
Overlap geneLOC100043486, A2m, EG640530
Upstream geneCecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3
Downstream geneMug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107, LOC100043805, Nanog, LOC100038891, Slc2a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404K14.T7 (MSMg01no404_k14.b1)MSMg01-404K14.TJ (MSMg01no404_k14.g1)
ACCAG503276AG503277
length756753
length of high quality
(start - end)		500 (38 - 537)502 (67 - 568)
definitionCHROMAT_FILE: MSMg01no404_k14.b1 PHD_FILE: MSMg01no404_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:25 2005CHROMAT_FILE: MSMg01no404_k14.g1 PHD_FILE: MSMg01no404_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(121,571,529 - 121,572,025)(121,723,507 - 121,724,008)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCC
ACATATACCCCTCCAGACAGGAAAGAATGGAGCTATGCATAAGTTATGAA
AGAAAATAACTGCCAACAAAATATTATACTCAGTGGAAGCCTCATTTAGA
AATGAAAAAGAAAGGAAGGCCTTTCAAGATAACCAATAACAGATGGAATT
CATGACTGCCCAAACCACACAGCTGGTGGGAAGGTGGACAGCATTAACAA
TGGTTGTGCATTGACAGAACGTCATCCTTTCGTGTTGTTTGACTGTTTTG
ATGGCAGCGAAACCTCCAGGACCTGATGCAGAACTTTGTTCTTTATAGAT
TCTTGGAGGTTAACTGAGTGAATCGTCTACTTGATCATCTTGAGATTCTG
AATATTGTGTCCCATTCTCCACTGAGTATCGTCAATGCATGTCCCCAAAT
GAGCCCAAATTCTGTACATTTAAGTGTCTTCCTCCTGCTTTCCTCAAATT
TGCCAATGGCAAGACCGTGTATTGATTTCACTTAAAAACCCAGTGTCATC
CTCAAAAGTGGGAAAGACAAACACACACCTATTTCATGAAGTTTTGGCTC
CCTGAAGTAAGAAGACCCAGAAAAGTACTAGCCCAAATGTCCCTCACACC
CTATTTCTAAAAACTACTCTCCCCCCATTCCTTGATTCTAAAAAAAAACC
CCCCTTTGAGGCCGGAGGGGGCTAACCCCCCAAAAGGACCTTTTTTAAAA
GAGAAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATGGAACACAGTGGTGTAGTGTAAATTTAGCCT
AACTTTCAGTTTCTTCTTCACTGTTAAACACTATAACAGTGATGCTGGAA
ATGATGCATTGAATCACTCATTTTGAAGGAGACTGGGTAACATCTTTATC
ATAGGTGAAGCCTTATCTATCAAGTTGGAAGGAACCACAGTGCATATTTC
CTTGGGTTGGATATTAGATAGTTAGTGAATGCCTACAGATACAATGTTTC
CTCTAGAAGGAATGAAGATGCATAATATAATCGTAGGCAACAGATCTTGT
GACAATGAATCACTCCAGACAAGAGCTGAATAATGTCAACATTATTTGTA
GAGATATTCTTGCAATGTTTTTTCTGTATTAAGATCTGCAGGATTCACTC
AATATTTTAATAAGTTTTCAATTTGTATAAAAACTGAAAGAGGTATAAGT
ACAAACTCTGGGGTTAGAAGAAGGAAGTTTATTACCCAGGAATTATAGCA
TTGCCTTGGGTTTGTACTGGCAAGAAATGTACGCATTAAAGTTGTAGATG
GAGGGTCTGCCATCTGTCTTTTCTCTAGGAAAATTATACCCCCTGATTTA
TTCCGCGCCTCCCTTATAAATTTCCCACCTGAATTCTAAGCCTAAAAAAT
TCTCTCCCCATTTTTTAATTCCTCACCCCCCTTCCGAGCTTTACTTCCTA
AAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_k14.b1 MSMg01no404_k14.b1 CHROMAT_FILE:
MSMg01no404_k14.b1 PHD_FILE: MSMg01no404_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:25 2005
         (500 letters)



>mm_chr6_121571326_121572225
          Length = 900

 Score =  915 bits (473), Expect = 0.0
 Identities = 491/497 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccccacatatacccctccagacaggaaagaatggagctatgcataagttatgaa 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccccacataaaaccctccagacaggaaagaatggagctatgcataagttatgaa 263

                                                                       
Query: 64  agaaaataactgccaacaaaatattatactcagtggaagcctcatttagaaatgaaaaag 123
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaaaataactgccaacaaaatattatactcagtggaagcctcatttagaaatgaaaaag 323

                                                                       
Query: 124 aaaggaaggcctttcaagataaccaataacagatggaattcatgactgcccaaaccacac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaggaaggcctttcaagataaccaataacagatggaattcatgactgcccaaaccacac 383

                                                                       
Query: 184 agctggtgggaaggtggacagcattaacaatggttgtgcattgacagaacgtcatccttt 243
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 agctggtgggaaggtggacagcattaataatggttgtgcattgacagaacgtcatccttt 443

                                                                       
Query: 244 cgtgttgtttgactgttttgatggcagcgaaacctccaggacctgatgcagaactttgtt 303
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 cgtgttgtttgactgttttgatggcagtgaaacctccaggacctgatgcagaactttgtt 503

                                                                       
Query: 304 ctttatagattcttggaggttaactgagtgaatcgtctacttgatcatcttgagattctg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttatagattcttggaggttaactgagtgaatcgtctacttgatcatcttgagattctg 563

                                                                       
Query: 364 aatattgtgtcccattctccactgagtatcgtcaatgcatgtccccaaatgagcccaaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatattgtgtcccattctccactgagtatcgtcaatgcatgtccccaaatgagcccaaat 623

                                                                       
Query: 424 tctgtacatttaagtgtcttcctcctgctttcctcaaatttgccaatggcaagaccgtgt 483
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctgtacatttaagtctcttcctcctgctttcctcaaatttgccaatggcaagaccgtgt 683

                            
Query: 484 attgatttcacttaaaa 500
           |||||||||||||||||
Sbjct: 684 attgatttcacttaaaa 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no404_k14.g1 MSMg01no404_k14.g1 CHROMAT_FILE:
MSMg01no404_k14.g1 PHD_FILE: MSMg01no404_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:25 2005
         (502 letters)



>mm_chr6_121723307_121724208
          Length = 902

 Score =  963 bits (498), Expect = 0.0
 Identities = 501/502 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatggaacacagtggtgtagtgtaaatttagcctaactttcagtttcttcttcactgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 aatggaacacagtggtgtagtgtaaatttagcctaactttcagtttcttcttcactgtta 643

                                                                       
Query: 61  aacactataacagtgatgctggaaatgatgcattgaatcactcattttgaaggagactgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aacactataacagtgatgctggaaatgatgcattgaatcactcattttgaaggagactgg 583

                                                                       
Query: 121 gtaacatctttatcataggtgaagccttatctatcaagttggaaggaaccacagtgcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gtaacatctttatcataggtgaagccttatctatcaagttggaaggaaccacagtgcata 523

                                                                       
Query: 181 tttccttgggttggatattagatagttagtgaatgcctacagatacaatgtttcctctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tttccttgggttggatattagatagttagtgaatgcctacagatacaatgtttcctctag 463

                                                                       
Query: 241 aaggaatgaagatgcataatataatcgtaggcaacagatcttgtgacaatgaatcactcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aaggaatgaagatgcataatataatcgtaggcaacagatcttgtgacaatgaatcactcc 403

                                                                       
Query: 301 agacaagagctgaataatgtcaacattatttgtagagatattcttgcaatgttttttctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agacaagagctgaataatgtcaacattatttgtagagatattcttgcaatgttttttctg 343

                                                                       
Query: 361 tattaagatctgcaggattcactcaatattttaataagttttcaatttgtataaaaactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 342 tattaagatctgcaggattcactcaatattttaataagttttcaatttgtaaaaaaactg 283

                                                                       
Query: 421 aaagaggtataagtacaaactctggggttagaagaaggaagtttattacccaggaattat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aaagaggtataagtacaaactctggggttagaagaaggaagtttattacccaggaattat 223

                                 
Query: 481 agcattgccttgggtttgtact 502
           ||||||||||||||||||||||
Sbjct: 222 agcattgccttgggtttgtact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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