BAC Information

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BAC

Clone NameMSMg01-404P10
Chromosome6 (Build37)
Map Location 66,858,875 - 66,859,267
singlet/doubletsinglet
Overlap gene4930597O21Rik, Gng12
Upstream genePrdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008
Downstream geneLOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404P10.T7 (MSMg01no404_p10.b1)MSMg01-404P10.TJ (MSMg01no404_p10.g1)
ACCAG503506AG503507
length775760
length of high quality
(start - end)
319 (63 - 381)394 (65 - 458)
definitionCHROMAT_FILE: MSMg01no404_p10.b1 PHD_FILE: MSMg01no404_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:49 2005CHROMAT_FILE: MSMg01no404_p10.g1 PHD_FILE: MSMg01no404_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGACGCTAAACGACTCACCTTTTCAAGAGGAGCCGCGGAANTCCTCTTT
TTCCTTTAAGATCCCCTTGATCTCCTTTTGTTGTCAAATTGCTCTGGCTA
GACTTCAAGTACTATATTCAATAGGCAGAGAGAAAGTGGGCAGCCTTGTC
TAGTCCCTGATTTTAGTGGGATTACTTCCAGCTTCTCACCATTTACTTTG
ATGTTGGCTACTGGTTTGCTGTAGATTGCTTTTATCATGTTTAGGTATGG
GCCTTGAATTCCTGATCTTTCCAAGACTTTTATCATCAATGGGTGTTGGA
TCTTGTTTTTTGTTTTCTCAGCATCTAACGAGATGATCATGCGGTTTTTG
TCATTGAGCTTATTTATATAATGGATTAATTTGATGGATTTCCGTATATT
ACACCACCCCTTGCATTTCTGTAATTTAAATCTTACTTGGTCTGGATGCA
TGATTGCCCTACTGTTTTGTTCATTTTGCCCCAGCTTATATTATCTGATT
AATTTTTGCCCTCCCTTATCTTTTTTGCATTTTTTTTTTACCATTCCTAT
TTTTTTTTCTCCCCCTCTTTTGCCTTATATTTCCCCCCCCTCTTTTCATT
TTTTTAATTATTCCCTCTTTTTTTTTTTTTTCCCCCTTTTCCGACACATT
TCTTTTTTTTTTTCCCCCCCTTTTTTTCCTCACCCCACTTTTTTATCTCT
ATTCACCCCTCCTCTTTTTATTTTTGTAATTTCCCCTTTTTACTTACCCC
CACCCCCCCCTTTTTATTATTACTG
GTGAGGCCTGGCGGCCGCCTGGGTCCTGACTGGGGGNGACACTATAGAAG
GTTCTGAGAAAATCCTAGAAACTGGGCAATATGCGAATTCACTGACAGTG
AAGCTGCTACAGAGATTACTGATTGTATCTTCCCAATAAGTAATTCTGTA
CTTATCTTGCTGCCTGCTGGAAGAGTGGGGTGAGGCTGACCTGAAAGCAG
CAGGCTAGACCAGCTGGGCTTGCCACACAGAGAGCAGCTATCTAATACTG
TTCATGGAGGGTGTGCATACCAAACACTGCTGACTGAATCTCACTATTAA
CTCCTTTTAATANTCAGGTTGCCTTTGGGTAGGTGCACTGTCACCTCCAC
TTTAAGGGTAGTGATTTTAAGTCTTCAGGGCTGGTAAGAATCATAGCTGG
ACCGAACCTGGACAGGAAGCTCCTTCCAGACAGGACTGGGTAATTTTGGT
GAGCCCATTGTCATGCAGGAAGTAACCACTCAGAACTTCATTTCAGAGAA
ATCACCTGGTGACAGCAGAGTGCAAAAGTCATGTTCATAGAGATGCTGTC
TAGGAAGCGCCCAGCGATAGTTCTGCCTGGAATAAAACCCATGTCCGGCA
TAAAGGACATCTTATAACCCCGCCTCCCCCATCCTATCTTTTTTTTTTTT
TGTGACAGGCTCTGAATAAACACTATATGTGTCTTTTTCCCCACACCCCA
TACTTTTATATTTTCTCCCTCCATTATTTTTTCCTATTTTCTATTCTCCT
CTTTACCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_p10.g1 MSMg01no404_p10.g1 CHROMAT_FILE:
MSMg01no404_p10.g1 PHD_FILE: MSMg01no404_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:49 2005
         (394 letters)



>mm_chr6_66858675_66859467
          Length = 793

 Score =  632 bits (327), Expect = 0.0
 Identities = 378/397 (95%), Gaps = 7/397 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagaaactgggcaatatgcgaattcactgacagtgaagctgctacagagattactgatt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 593 ctagaaactgggcaatatgcgaattcattgacagtgaagctgctacagagattactgatt 534

                                                                       
Query: 61  gtatcttcccaataagtaattctgtacttatcttgctgcctgctggaagagtggggtgag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 533 gtatcttcccaataagtaattctgtacttatcttgctgcctgctggaagagtggggcgag 474

                                                                       
Query: 121 gctgacctgaaagcagcaggctagaccagctgggcttgccacacagagagcagctatcta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 473 gctgacctgaaagcagcaggctagaccagctgggcttgccacacagagagtagctatcga 414

                                                                       
Query: 181 atactgttcatggagggtgtgcataccaaacactgctgactgaatctcactattaactcc 240
           ||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 413 atactgttcatagagggtgcgcgtaccaaacactgctgactgaatctcactattaactcc 354

                                                                       
Query: 241 ttttaa---tantcaggttgcctttgggtaggtgcactgtcacctccactttaagggtag 297
           ||||||   ||  |||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 353 ttttaaatcta--caggttgcctttgggtaggtgcactggcacctccactttaggggtag 296

                                                                       
Query: 298 tgattttaagtcttcagggctggtaagaatcatagctggaccgaacctggacaggaagct 357
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 295 tgattttaagtcttcagggctggtaagaatcatagctggactgaacctggacaggaaact 236

                                                
Query: 358 ccttccagacaggactgggtaattttggtgagcccat 394
           |||||||||||||| | ||||||||||| ||||||||
Sbjct: 235 ccttccagacagga-t-ggtaattttggggagcccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 793
Length adjustment: 9
Effective length of query: 385
Effective length of database: 784
Effective search space:   301840
Effective search space used:   301840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)