BAC Information

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BAC

Clone NameMSMg01-404P14
Chromosome6 (Build37)
Map Location 128,553,915 - 128,554,095
singlet/doubletsinglet
Overlap genenone
Upstream geneEfcab4b, Prmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546
Downstream geneKlrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404P14.T7 (MSMg01no404_p14.b1)MSMg01-404P14.TJ (MSMg01no404_p14.g1)
ACCAG503514AG503515
length8041,425
length of high quality
(start - end)
181 (126 - 306)---
definitionCHROMAT_FILE: MSMg01no404_p14.b1 PHD_FILE: MSMg01no404_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:49 2005CHROMAT_FILE: MSMg01no404_p14.g1 PHD_FILE: MSMg01no404_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTGCGCTAAACGACTCACTAATTCGAGAGATCCGCGGAATTCCAGGACTT
TCCGGGCTATACAGAGAAACCCTGTCTCGAAAAAACAAACCAACCAAAAA
CAACCAACCAACCAATAACCCTGGATTAAATGATATCCTCCTCTATGTCA
CCAGACTGAAAGGGAGAGGTCACCCTCTGTACACATTTCCCGTGGAAAAT
GTCAAAGAACTTGGGAGCCAAATTTTTAACACTGGAACTGAAATGAGGAT
AAAATGTTCGGTCACACACACCCAGAACGCTGGTCCTGGACTCTTCAATG
GATGCCAGTTTTTATAGGAAAGGATGGATTGCTCTTTATTAAAAGAGACC
AAAATGTCTACAACCAATGGTAAACGCTAAACTGGGGCTGAACTCTGGAT
TGACAAAGCAGGGTCTAAAATATATTTAATGATAGTTTAGCAAAACTCAT
AAAATTCCGATATAGGACCTATCTTATATTGCCCCCGTTGTATTTTTTTA
CCTTTATCTCATCCCGACATTTTTATTATTTTTATATTCTTAGCCTACCA
AGTTTTTACATTCCCGCCCCCTTTTTTTTCTTTATTTTTCTCCCCTCTTC
CCTTCTGTATATTCTTATTACATACTTTTATTTTTTTTTTTTCCCCCCCT
TTCTTATCTAATTTTTTTTTCTTTTTCCCGCCCCCTTTTTATTTCTCCAC
CCTTTATTCTATTTTATTTATTTCCTCTTTTCCTCTTTTTTATTATCTTT
ATACCCTTTTTTTACTGTTCACTCCCCCCTCCCCCCTTTATCTATTATTC
CTTG
TCTTTGGTTTTTGCGTTTGTTCTGCCTTTGTTTGCTGTATATATTATTTA
AGTTCGAGTGAGCTGAGTAGGTAGATGTAATCTCAGCTCGGTAGATTGCG
TCGTGGAGGTAGGTGATCAAGCGTGCTCGAGTGTGTGATTGTAGTATTGT
AGTGATGTNAGACGCCGGACGGCGTGATCCTTGTGATACCNACCGTTGTT
GTCTTTCGTACCGCCACCCCATGTCTATCAGCACACAAGTGCATTACCTA
AAACAACCATATAAACGCAGAGCGAGCAGTGGTGTGATGATGTGAGTGAT
GTCAGATCGCAATGGTATCGCTCGTGAGACGACCATATCTATGATGACAT
ATTGAATCAGTCGGTTGTGATTGCAAGTATAATCATATAATAATAGTATT
AAGATTNATANTGCTTACTGCTACACCCACGACCTCAGATAACGCACTAT
ACTATCTAGAGCAGGCGATAGACGTGCGGCGGCGAGCGTGCCAGCGACTG
ATTAGTGCGGCTCTGTCACGAATGCTAATCGCTATTATTCGGCGCGCGCG
TGATGAGTGAGTGGCGCCGGCAGGCGNGTGGTCGCGCTCGTGCGTGTTAG
TATGGCGAAGTTGGCGAATATCGCGCGACTNCAGCGTGTCTGTATTCTAG
TAGTATGTTAGGTGGGCGGCGTCGTGGATGTTATGAGGCGGTATGTGCGC
GATACGTGTATGTGAATATCGACGTGTATCACTCGCTTTATATTACCCTC
ATGTCTATGATATATTATTACACGCGNCGCCGTTGTCGCTCGATGAAATG
AAATGAACGCAGGCAATGTAGTAAACGAGTCCCCATATAACAGCCTGATA
ATAATATATAATCACGCTCATGACTTCTATATAGATATATATGGCGACGC
GCCATCACGTATACGGCGTACGCACGCTGAGTATGATATGTGCGCGCGCG
TTGTATCGTAAGTTACGCGCGCACTTATGTAGACAATAATNATATATACG
TTCACGCGCCGCGCGTATAGATGCAAGTATAGTATAATGAGATATAGTAC
GCGCCGGCAGATGTAGATGATCATACTACAACCTCGTACCACTCACCGCA
CACCAGACATACTAACATATATATCGATAAANATGTGATTATAAAACATA
CAATAACCCACTGATACACTGCTGCTCGCGATCTCTTATGTATATATATT
GACAGTATATGCACGCTACGTGCGTCGCGTACGAGCTGTNGAGANACGAG
AGAAGCGTCATTGTAGTGATGAAGATGCACACTATATATACCGCGCCGAA
CTCCCCGCACTGCTCACTTNATACACATATAATAATAATATAATCTCGAC
CNACTATGAGTATTTTATTGTGTATNATGCATCTCATCAGCATATACTGA
CTCCGCTACCTATACTCTATCATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_p14.b1 MSMg01no404_p14.b1 CHROMAT_FILE:
MSMg01no404_p14.b1 PHD_FILE: MSMg01no404_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:49 2005
         (181 letters)



>mm_chr6_128553715_128554295
          Length = 581

 Score =  327 bits (169), Expect = 3e-94
 Identities = 178/181 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaatgatatcctcctctatgtcaccagactgaaagggagaggtcaccctctgtacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaatgatatcctcctctatgtcaccagactgaaagggagaggtcaccctctgtacaca 260

                                                                       
Query: 61  tttcccgtggaaaatgtcaaagaacttgggagccaaatttttaacactggaactgaaatg 120
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| 
Sbjct: 261 tttcccgtggaaaatgtcaaagaacttggaagtcaaatttttaacactggaactgaaata 320

                                                                       
Query: 121 aggataaaatgttcggtcacacacacccagaacgctggtcctggactcttcaatggatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggataaaatgttcggtcacacacacccagaacgctggtcctggactcttcaatggatgc 380

            
Query: 181 c 181
           |
Sbjct: 381 c 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)