BAC Information

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BAC

Clone NameMSMg01-405A22
Chromosome6 (Build37)
Map Location 126,014,818 - 126,015,038
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
Downstream geneNtf3, LOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405A22.T7 (MSMg01no405_a22.b1)MSMg01-405A22.TJ (MSMg01no405_a22.g1)
ACCAG503578AG503579
length815854
length of high quality
(start - end)
392 (47 - 438)221 (78 - 298)
definitionCHROMAT_FILE: MSMg01no405_a22.b1 PHD_FILE: MSMg01no405_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:56 2005CHROMAT_FILE: MSMg01no405_a22.g1 PHD_FILE: MSMg01no405_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTTATCATCTCCTAGAATCTAAAAGACTTGGGTAGCCCCGCAT
TTCCAGCTCTGCCATTTGAAGCACACACTACTTGTCTTAGTCTCATGATG
GCTTTGTACCTGCTACTGGCCTTAGCATACATAGTTTGGCACCCTCAATA
TTCTGGGGTTTCCATTGCAGCAGAGGCTGTGACTTTACCAGTGGCCTTTC
CTGTTCTCACTTAAAAAGCTTGATCCTGGCACATGCTGCTTGCCAGGTTG
CAGCCACTCTCTATACCCCACTGATCTTCTATCTGTATTACCTTCAAAGC
TTGTACCATACGGGAGACTCTCACATATTGTTAAGTATGGCTTCCAACTT
GAGGTGACGTCTGTTTCTCCTGGACCACAGCTTTTGTGTGCTGTCTCTGA
GGCATGCTTCCTATAAAAAAATTGGCTCAGTGATGTTACTTATCTTGTTC
AACATAGTATGATTCTCCCTTTGTCCACCCCCCCTTGTTTTTGCCCACCC
CAGAAGGATTCCTCTTTATTGGTGCTGCCCCTCTCTCTCTATTAAATTTT
TTTTATTTTTTCCCCTGGATTTTTTTTCCTTCTTTTCTTCTCTCTTTTCC
CTTTTCTTTTTTTCTTTTTCGTACCCCCTTTTCTTCCTCTCTCTTCTTTC
TTTCTCATTCACCCCCTTCTCCCTCTTCTCTTTTTCATTCCCTCACATTT
GATATCCATTTTTATTTTATTTTGACTTTTCATTTTATTTTTCTCCCTCC
TCTTATTTCCCCCTT
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTCAGTTTCTTTTTAAATTT
TGAGCTTTGAGGAGTGTATATGGACTTGAGGAAGCATTTACTATTCTAAT
TTTATTAATTATATCTGTTTTCAAATATTTATCTATGATTACATTTTTAT
TGTGTTAAAATCTCTATTCTGTACCTTTAATTTTTACCCCTTTCCCCATC
CCCTCCCCCGACTTTTTTTTTTTTGGTTCTATCATTAGTGTCCTGCTCTT
AAAATTTATGTCTTCCTAGAGACTGATCCTCTGTCTAGTTTGAGTCTTTT
CTTTACACTGCACTGCTCTTGATCTGTGCTTTGTCCCTCCCTACTCTCCT
TTTTCTTGACTTTGTGTTTTCTCTTTCTCTTTTTTTCCTCTCTTCTCACC
CTTTTTCCTTCCCGTTCCCCTCTTTCTTTCCGCTTTTCCCACTCCCTGTT
TTTCTCCCATTTTTTTTCTCCCTTTTTTTCCCTTTCTCTTCTCCCTACCT
CCTATTCCTCACCCCTTCCTTTTTTCCGTTCCTCTATTTTTTACTCATCT
CCCCCCCCTTCCTCTTCTTCATTCTCGTTTTACCCCGTTCATTCTTTTCC
CCCTTCTTTTTTTTTCTCCCTTCTTTTTTTTCCCTCTCTCTTGCCGTTTT
TTTGTTTTTCCCTCTCTTTTTATTCCCTCGTTTATCGCTCTTCTCTTCTT
CTACTTTCCTCTCTTTTTTCTCCCCCCCCTTTCTTCCTCTCTTTTTTTTC
TCTTCCCCTTTTTTCCGCCTTCTTTTTTCTTCTCCTCCTCGCTTTCCTTT
TCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_a22.g1 MSMg01no405_a22.g1 CHROMAT_FILE:
MSMg01no405_a22.g1 PHD_FILE: MSMg01no405_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:56 2005
         (221 letters)



>mm_chr6_126014618_126015238
          Length = 621

 Score =  420 bits (217), Expect = e-122
 Identities = 220/221 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttcagtttctttttaaattttgagctttgaggagtgtatatggacttgaggaagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tccttcagtttctttttaaattttgagctttgaggagtgtatatggacttgaggaagcat 362

                                                                       
Query: 61  ttactattctaattttattaattatatctgttttcaaatatttatctatgattacatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttactattctaattttattaattatatctgttttcaaatatttatctatgattacatttt 302

                                                                       
Query: 121 tattgtgttaaaatctctattctgtacctttaatttttacccctttccccatcccctccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tattgtgttaaaatctctattctgtacctttaatttttacccctttccccatcccctccc 242

                                                    
Query: 181 ccgacttttttttttttggttctatcattagtgtcctgctc 221
           || ||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccaacttttttttttttggttctatcattagtgtcctgctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)