BAC Information

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BAC

Clone NameMSMg01-405B04
Chromosome6 (Build37)
Map Location 45,025,276 - 45,025,772
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405B04.T7 (MSMg01no405_b04.b1)MSMg01-405B04.TJ (MSMg01no405_b04.g1)
ACCAG503590AG503591
length1,054777
length of high quality
(start - end)
---497 (79 - 575)
definitionCHROMAT_FILE: MSMg01no405_b04.b1 PHD_FILE: MSMg01no405_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:57 2005CHROMAT_FILE: MSMg01no405_b04.g1 PHD_FILE: MSMg01no405_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCGTTCTCCTTTTCCTCTCTCCTTCTCTTTCCCTTTTTTCTCTCTTC
TCTACTTTCCCTCTGTCCTCTCCATCTATTTTTCTTCTCTTTCTCCTTTC
CTTCTCCCTCCTCCTCCTTCTTTCTTCTCTTNTTCTTCCTCCTCTCCTTT
CTCGTCTTCTTCCCTTTTTCCCCCCCTCCTTCTTCTCTACTCCTCCTCTT
CTTTCTTTCTCACTTCTCCCCATCTTTCTTTTCTCTCTTCTCTCCCTCCC
TTCTTTCCCTCATCCTTTCCCCCCCCCACCTCCCCCTCCCATCTTATCTT
TTTCCCACCCTCCTCACCTCTATCTCATCCTATCTCCTGCACTTTCTCCT
ATCCCCTCTCTCCTTCCCCCCTCTTTTCTTCGCTTCTTTCCACCTCTTCT
TACCTACTCCTCTACCTTTTCACCTTCTCTCACTCCCCCTCCCCCGCTCC
NTCTCCTCTTACTTCTCTCTGTCTCCCCCTCTTCTCCCCCTTTCTTCTCC
CCCCCTCTCCCTTTACCTCTTACTCTTCTTCCTCTCTTTGTTCCTCCACT
ACGCTCCTACCCTCTTCTCCTCATCTCCTACATCTCCTTCCTCCTCGAGT
CTCCTTCCNCCCCTCTCCCCCCCCTTCTCCTNTCTTTTTCCCCCCCCNTN
NTTNNNCCCTTCTTCCAGCTTGCGGTAGCGAGAGATGGATTTCATGAGTG
CGCCTCTTTCTTCCAGCCCCCGCTCCTCCCCTCTTCCCCCTCCCACCATT
CTGTCGACCAGCCATATAGTGTTCNCTTGCGCGGCGNTGCGATGTGCTGA
GCCCGCGAATCGCCCTCTACTTAGCGTGTAGTAAGATATGCTGANCAGGC
GTTGTGTAGTGTCCTCTTTACAGCACCGTGCTTCTCTCTTTTAGTACCGT
CCATCTTTCCTCCACATTGTTTCCCATATTTTCCATCAGCCGCTTCTGCC
TCTCCCTCTTTCTCCACCCCTGCCCCCCCGCGTCGCTCGTTGCTGCCTAA
TGGTTCTCNCCCCCGCTACTCTCGCGCTTTCGTTTTCTTCTTTCACTTAC
ACCG
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTACTTATAAACCTGGTTAAG
GGCCAACACTAAAGTCTAGTTTTCTGTACCTCAAAGTCTGTTCTAAAAAT
CTTTGTAAGATGCTCAGCCAAATGATATGCAGCTTCCTCTCATCTACCAT
GAACTCTTTGACAATTTTAATGTCAATACACTTCAACAGGTCATCAACTA
TAATTACAATTTTCAGGAGAGTCCTTGGAGTGTTAAGACATAATGATATA
GGAACATCTTCATTAGAAGTGAACACTACAAAAAAATTCACCCATTTATG
GTGATCAAACTTTTACGATAATAAACAGTTGTGTATACCATAGAGAAGAT
GTCAAACATATCTCACAGCTAGTGGATAAATTCATGTGCTCATGAAACTT
TCACATGTATTATTTCTGATTTCCGCATGCTTCTAGAATTCTTCCTAGCC
TAGGGGAATTTTGCATTTCATATGGAATCGAATAATTTTTTCAAATACAT
AATCATCAGTCACCTGAAGTACAACATCAAAATGAAAGCCAGCTGTACAC
AAATACAATTTTCACAATACATAAAGAATATAGGTAATTTTTAAGGGATA
ATAATACAAAAATTTTCCCCATAAAACCAAATCTAAAGTTGTGTATTTCT
AGGGGCCACTTTTTTATTGATGAAAATGGTCATTTTTGTTCAAAGAATTA
AAACCTCTTTTTAAAAAATAAGTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_b04.g1 MSMg01no405_b04.g1 CHROMAT_FILE:
MSMg01no405_b04.g1 PHD_FILE: MSMg01no405_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:57 2005
         (497 letters)



>mm_chr6_45025076_45025972
          Length = 897

 Score =  938 bits (485), Expect = 0.0
 Identities = 494/497 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacttataaacctggttaagggccaacactaaagtctagttttctgtacctcaaagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 attacttataaacctggttaagggccaacactaaagtctagttttctgtacctcaaagtc 638

                                                                       
Query: 61  tgttctaaaaatctttgtaagatgctcagccaaatgatatgcagcttcctctcatctacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tgttctaaaaatctttgtaagatgctcagccaaatgatatgcagcttcctctcatctacc 578

                                                                       
Query: 121 atgaactctttgacaattttaatgtcaatacacttcaacaggtcatcaactataattaca 180
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 577 acgaactctttgacaattttaatgtcaatacacttcaacaggtcatcgactataattaca 518

                                                                       
Query: 181 attttcaggagagtccttggagtgttaagacataatgatataggaacatcttcattagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 attttcaggagagtccttggagtgttaagacataatgatataggaacatcttcattagaa 458

                                                                       
Query: 241 gtgaacactacaaaaaaattcacccatttatggtgatcaaacttttacgataataaacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gtgaacactacaaaaaaattcacccatttatggtgatcaaacttttacgataataaacag 398

                                                                       
Query: 301 ttgtgtataccatagagaagatgtcaaacatatctcacagctagtggataaattcatgtg 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttgtgtataccatagagtagatgtcaaacatatctcacagctagtggataaattcatgtg 338

                                                                       
Query: 361 ctcatgaaactttcacatgtattatttctgatttccgcatgcttctagaattcttcctag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctcatgaaactttcacatgtattatttctgatttccgcatgcttctagaattcttcctag 278

                                                                       
Query: 421 cctaggggaattttgcatttcatatggaatcgaataattttttcaaatacataatcatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cctaggggaattttgcatttcatatggaatcgaataattttttcaaatacataatcatca 218

                            
Query: 481 gtcacctgaagtacaac 497
           |||||||||||||||||
Sbjct: 217 gtcacctgaagtacaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)