TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATCAATTATATCTCATATAACATACATGTGAAAGAACTTTCAACCTGGG
AACTCTTTCCTGTTTGTTTGTAGATCATTCCTACTTGGATAATTTCCCTA
TTCTGCAACCAACACCATCTGTAAGGACTTCAGGTCTAAATGATTCTCTG
AACATATTTTATGGAAATTAAGATTATTCAAGTTATAGATAGGAATCAAC
AAAACCAATCCACTGATGCCTGAAAATCTGAAATTCAAGCCATGCTCCAC
AATAAAGTTTTATAGAGTATGATCCTCCTCTTCTAAGTTACAATATCCTT
TCTCTTTCTTATTCTTTCACTATGGGATCAGATGTCCTCTCTGGCCTCTG
TGAGCACCTGAACACAAATGCACATATCCACATGCAAACACACACAAATG
CACACACACACACACACACTTAAAATTAACAATGAAGTCTAAAGAGATGA
CAGACAAAAAGACAGAGCATCTTATTTAAGCAGATCTTTGTTTAATACAC
TTTCAGTATGTATTTCACAGCCTTGCACATTGGGCCATATTTTGCTCCAC
TGTATTGCTTTCACAAATTGNNAACCTCTTCCCATCTCATGTTCTTGGAG
GCACAGACAGGTCTCTCCTGCCATTTCTGCTAAAGAAGAATCCCCCTAAA
CTTTCACTGGCTAATCTCTTGGCCCCCCAAATAAACTCCTGATAAATTCT
TGGATTCCAAATTCTCCCAAAAAAGGGG

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGATAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAATCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATGC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGAAAAGAACCCAGATGTCCCCTCATAGAAGAATGGATATCGAACAT
GCGGTACATTTTTTTCTTGGACGACTATTCTTTTTTTTTTAAAAAATGAA
TTTATGCCCTTTTCACTTTTCCTGTTTGGATCCTGTGGGTCCCTCCCTCC
GCTTTTTTTTCATCTTTTCCTCCGCGCACTTTTTCCTTTGTTTCACATTT
TTTTTTTTGCTACTTTTTTTTTTCCTATTTTCGCCCCTTATTTTCACGTT
CTTTATTTTTTTTTTTTCCCTATTCTTACTATTTTCCCCCCTTGGTTTTT
TTGTTTTGTCCTCTTGTTTCTTCTTTTTCTCCCCCTTCTTTCCN

Query= MSMg01no405_b20.b1 MSMg01no405_b20.b1 CHROMAT_FILE:
MSMg01no405_b20.b1 PHD_FILE: MSMg01no405_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:00 2005
         (521 letters)



>mm_chr6_78344540_78345460
          Length = 921

 Score =  862 bits (446), Expect = 0.0
 Identities = 500/544 (91%), Gaps = 40/544 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataacatacatgtgaaagaactttcaacctgggaactctttcctgtttgtttgtagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tataacatacatgtgaaagaactttcaacctgggaactctttcctgtttgtttgtagatc 486

                                                                       
Query: 61  attcctacttggataatttccctattctgcaaccaacaccatctgtaaggacttcaggtc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 attcctacttggttaatttccctattctgcaaccaacaccatctgtaaggacttcaggtc 426

                                                                       
Query: 121 taaatgattctctgaacatattttatggaaattaagattattcaagttatagataggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 taaatgattctctgaacatattttatggaaattaagattattcaagttatagataggaat 366

                                                                       
Query: 181 caacaaaaccaatccactgatgcctgaaaatctgaaattcaagccatgctccacaataaa 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caacaaaaccaagccactgatgcctgaaaatctgaaattcaagccatgctccacaataaa 306

                                                                       
Query: 241 gttttatagagtatgatcctcctcttctaagttacaatatcctttctctttcttattctt 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 305 gttttatagagtatgatcctcctcttctaagttacaagatcctttctctttcttattctt 246

                                                                       
Query: 301 tcactatgggatcagatgtcctctctggcctctgtgagcacctgaacacaaatgcacata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tcactatgggatcagatgtcctctctggcctctgtgagcacctgaacacaaatgcacata 186

                                                                       
Query: 361 tccacatgcaaacacacacaaatgcacacac----------------------------- 391
           |||||||||||||||||||||||||||||||                             
Sbjct: 185 tccacatgcaaacacacacaaatgcacacacacacacacacacacacacacacacacaca 126

                                                                       
Query: 392 -----------acacacacacacttaaaattaacaatgaagtctaaagagatgacagaca 440
                      |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cacacacacaaacacacacacacttaaaattaacaatgaagtctaaagagatgacagaca 66

                                                                       
Query: 441 aaaagacagagcatcttatttaagcagatctttgtttaatacactttcagtatgtatttc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 65  aaaagacagagcatcttatttaagcagatctttgtttaatacactttcagtatgtttttc 6

               
Query: 501 acag 504
           ||||
Sbjct: 5   acag 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)