BAC Information

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BAC

Clone NameMSMg01-405B23
Chromosome6 (Build37)
Map Location 60,400,176 - 60,400,526
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik
Downstream geneLOC667066, LOC100041726, Snca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, C130092O11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405B23.T7 (MSMg01no405_b23.b1)MSMg01-405B23.TJ (MSMg01no405_b23.g1)
ACCAG503628AG503629
length785779
length of high quality
(start - end)
319 (48 - 366)350 (75 - 424)
definitionCHROMAT_FILE: MSMg01no405_b23.b1 PHD_FILE: MSMg01no405_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:01 2005CHROMAT_FILE: MSMg01no405_b23.g1 PHD_FILE: MSMg01no405_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTTCTCTCTGTTAAATAACACAGAAGTGGATGCTCACAGTCA
GCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACT
CAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACATTATGAAC
TAACCAGTACCCCAGAGCTCTTAACTCTAGCTGCATATGTATCAAAAGAT
GGCCTAGTCAGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTT
TATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTG
GGGTATGGGATTGGNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTTTTTTTTTTTT
TTTNTNTTNTTTTTTTNTTTTTTNTTTTTTTTNTTTTTTNTTTNTTTTTT
TTTTTTTTTTTTTTTTNNTTNTTTTTTTTTTTTTTTTTTTTTTTTTTNTT
TTNNNNTTTTTTTTTTTTTTTTTTTTNNTTTNTTTNTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNN
NCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCACTTTTCATCTGATATCTCAGAC
TGGTATCTCAAGTTTAAGATGCTGACAATTATTGGCTTCTTGGTCCGCTG
ATGAAAAATCCATTAATCTTGCACTCTGCTTGAAGCAGAACTATAATTAC
ATTTAACATGGATGGTAAAATATATTTGTTGTAGGAAGTCATTGAGTCTT
GGGCTCTTTCTTATTTCAACAACACTAATCCCACCCAAGTCAGAAAATCA
TGAATGAATATTTCATGTTGTACAATGGAAGAGACTGGGTAATTTTATGG
CCTTAAACACAGCTCTAACTTACCTTGGTCATGTGTCCATGAGTTTGGTT
GGTATACAATTCCTTTCTTTCCAAGAACAGGTAAAGTGGTTCTTGATCAC
TAATATAGAATCTTGTTTAACGTGCATCTGTCATATATTAATTGTGAGAA
AGGGAAAGAACAGTATTATCTTACCTACCCAGCACCATTTAAATTATTCT
GGCCTCTCCTAAGGCTCTTTAAAGGAAAAGAATGATAGAAATGATGCTTT
GAGAAAAGAATCCCCCGTGTTCCAACATTTTTATCCCAAATTGTGTACGG
AAAAGTAAAGGGACAAAGGCGGTTTTTTTCCTCTCCCCCCTCCTAAAAAC
TACACATTTTAAGGGTTCCCTTTTTATTGGCGTGGAAACAAAAACCACAA
TAATTTCCGCGTTCTCTTCCTCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_b23.g1 MSMg01no405_b23.g1 CHROMAT_FILE:
MSMg01no405_b23.g1 PHD_FILE: MSMg01no405_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:01 2005
         (350 letters)



>mm_chr6_60399976_60400726
          Length = 751

 Score =  491 bits (254), Expect = e-143
 Identities = 329/360 (91%), Gaps = 19/360 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   accacttttcatctgatatctcagactggtatctcaagtttaagatgctgacaattattg 60
           |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 201 accacttttcatctgatatctcagtctggtatctcaagttgaagatgctgacaattattg 260

                                                                       
Query: 61  gcttcttggtccgctgatgaaaaatccattaatcttgcactctgcttgaagcagaactat 120
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 gcttcttggtcctctgatgaaaaatccattaatcttgcaatctgcttgaagcagaactat 320

                                                                       
Query: 121 aattacatttaacatggatggtaaaatatatttgttgtaggaagtcattgagtc---ttg 177
           | |||||||||||||||||||||||||||||||||||||||||||||||||  |   |||
Sbjct: 321 agttacatttaacatggatggtaaaatatatttgttgtaggaagtcattga--cccattg 378

                                                                       
Query: 178 ggctctttcttatttcaacaacac-taatcccacccaagtcagaaaatcatgaatgaata 236
           | |||||| ||| |||||||| |  |||||| |   ||||||||||||||||| ||||||
Sbjct: 379 g-ctctttgttacttcaacaa-aggtaatcc-a---aagtcagaaaatcatgagtgaata 432

                                                                       
Query: 237 tttcatgttgtacaatggaagagactgggtaattttatggccttaaacacagctc-taac 295
           ||||||| ||||||||||||||||||||||| ||||||| |||||||||||| || ||||
Sbjct: 433 tttcatgatgtacaatggaagagactgggtatttttatgaccttaaacacag-tcctaac 491

                                                                       
Query: 296 ttaccttggtcatgtgtccatgagtttggttg-----gtatacaattcctttctttccaa 350
           ||||||||||||||||||||||||||||||||     |||||||||||||||||||||||
Sbjct: 492 ttaccttggtcatgtgtccatgagtttggttgctatggtatacaattcctttctttccaa 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 751
Length adjustment: 9
Effective length of query: 341
Effective length of database: 742
Effective search space:   253022
Effective search space used:   253022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)