BAC Information

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BAC

Clone NameMSMg01-405M20
Chromosome6 (Build37)
Map Location 19,557,245 - 19,557,667
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405M20.T7 (MSMg01no405_m20.b1)MSMg01-405M20.TJ (MSMg01no405_m20.g1)
ACCAG504147AG504148
length806796
length of high quality
(start - end)
279 (46 - 324)423 (77 - 499)
definitionCHROMAT_FILE: MSMg01no405_m20.b1 PHD_FILE: MSMg01no405_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:54 2005CHROMAT_FILE: MSMg01no405_m20.g1 PHD_FILE: MSMg01no405_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGACCGCGG
AATTCTCCAATTATAACACAGAATAAATGGCTGTATAACACAAAGTGATT
AGACCAAAGCAAAGATAGAAAAAAAAATCAGGAGAAACACAAATACACAC
ATATACACACACCACACACATATGCACATGCACACACACACACACATACA
CACACACACACACACACACACACACACACACACACACCATTTCTGCAATC
CTGCAGTCCCATTTCCAGCATTCAGAATTTGGGATTTGTGAGTGAATCTA
GGCTTTAATTGACTTGTGTATCTTTTTTTGCTGGCTTTGCTATGTGAATG
ACACAGCAGTCTATTGCTTCAGTTAACTCAACTCTACAGTTGTATCTCCG
AAGCCTCTCATTGTCCTGGAATTTCCCATTCTGTCAGATACAACCTTGTA
CATCATTAGCTTACTGAAATTTTGGTGCTAGACTGGATGACAACTCCTAA
TTATGCTATTTCTTCCCATAAAAACTTAATACCAAATGGATTATGCTGCA
AAATAAAATTGCTACCTTGGGATAAAGGCTAGCCCCTTGCTTCCACAGAA
GAGGCCATGTTCCTTTATGAAGCTTCCCCATCCGACACCGGAAAAAAACC
TCCCCCAGGGGCATAATTTTGTAGAGAAAACCCCTTCCACGGGGGTATCT
CAAATCAAAAACCCCCTTCTCTCCCAAGGGAATTAGCAAATTTTTTATAT
AATGAAAAAGTTTGTTTTACGTGAATTCTATAACTCGGTTCTCTTGTATA
AAAAAA
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCAAATCAGTAGATTTGCCATGA
TATGCAAAACAAGGGACCCGAATCTTCTTACAGTAAAATGATATAAAGCA
TCGTTTTATGAAAACAAATTGCCATTATAAATATGCTTTTTTTTATTCTA
TTAGAATATGTAACTTCATAATACCTACAGTAATTTTCTGATAACTGTAG
AGCCTTAGGTGACTTTGTGAAGTGTTTAGTCTCAGTTCATTCCAGTCTCA
GGGGGTGCCTTAAATTCAATCTCACTTAATTTGCTTGGGCATCTTTAATC
ACACCATTCCTGTGGACCATCAGTTATAGCTTTCCACCTAATTTTACACC
TGAGCTAACTGAGCAAGAGGGATTAAATAATGTTTGCCACTCATGAGGTA
AGTTAATGATGCAGGGGAAGGTAGAAAATGGTATCTTTATCTTCCTTGTA
GCTATCAACTCTTAACAGTTAAACAATTTTATCATTAGATGGAGAATTGA
AGGTTTAGAATCCAGGGATATTGCCATGCAATCCATATGCTGGTTGTTGT
GAAAATTACAATATAAACCCCTAAAATGGCGAATCTTTACACATAAAAAT
TTGGTTCCCTTTGTCCCGGGGTTCTCCTTTCTCCCATTCATACCTTAAAC
ATTTTTGCCCCCCCCCTATGGGTCCCTCCTCCATTATAGGGCCCCTCCTA
TTGCTCATTCTTTTTATCTTTTTACCTCTCCTCTTCCTATTTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_m20.g1 MSMg01no405_m20.g1 CHROMAT_FILE:
MSMg01no405_m20.g1 PHD_FILE: MSMg01no405_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:54 2005
         (423 letters)



>mm_chr6_19557045_19557867
          Length = 823

 Score =  787 bits (407), Expect = 0.0
 Identities = 419/423 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaaatcagtagatttgccatgatatgcaaaacaagggacccgaatcttcttacagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaaatcagtagatttgccatgatatgcaaaacaagggacccgaatcttcttacagtaa 260

                                                                       
Query: 61  aatgatataaagcatcgttttatgaaaacaaattgccattataaatatgcttttttttat 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggatataaagcatcgttttatgaaaacaaattgccattataaatatgcttttttttat 320

                                                                       
Query: 121 tctattagaatatgtaacttcataatacctacagtaattttctgataactgtagagcctt 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctattagaatatgtaacttcatgatacctacagtaattttctgataactgtagagcctt 380

                                                                       
Query: 181 aggtgactttgtgaagtgtttagtctcagttcattccagtctcagggggtgccttaaatt 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcgactttgtgaagtgtttagtctcagttcattccagtctcagggggtgccttaaatt 440

                                                                       
Query: 241 caatctcacttaatttgcttgggcatctttaatcacaccattcctgtggaccatcagtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatctcacttaatttgcttgggcatctttaatcacaccattcctgtggaccatcagtta 500

                                                                       
Query: 301 tagctttccacctaattttacacctgagctaactgagcaagagggattaaataatgtttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 tagctttccacctaattttacacctgagctaactgagcaagagggattaaataatgtgtg 560

                                                                       
Query: 361 ccactcatgaggtaagttaatgatgcaggggaaggtagaaaatggtatctttatcttcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccactcatgaggtaagttaatgatgcaggggaaggtagaaaatggtatctttatcttcct 620

              
Query: 421 tgt 423
           |||
Sbjct: 621 tgt 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)